Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17660 and PS417_17665 are separated by 57 nucleotides PS417_17665 and PS417_17670 are separated by 1 nucleotides
PS417_17660: PS417_17660 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,855,237 to 3,856,439
_17660
PS417_17665: PS417_17665 - ABC transporter permease, at 3,856,497 to 3,857,357
_17665
PS417_17670: PS417_17670 - ABC transporter permease, at 3,857,359 to 3,858,369
_17670
Position (kb)
3856
3857
3858 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3855.681 kb on + strand, within PS417_17660 at 3855.682 kb on - strand, within PS417_17660 at 3855.745 kb on - strand, within PS417_17660 at 3855.762 kb on + strand, within PS417_17660 at 3855.763 kb on - strand, within PS417_17660 at 3855.840 kb on + strand, within PS417_17660 at 3855.840 kb on + strand, within PS417_17660 at 3855.841 kb on - strand, within PS417_17660 at 3855.913 kb on + strand, within PS417_17660 at 3856.074 kb on + strand, within PS417_17660 at 3856.074 kb on + strand, within PS417_17660 at 3856.170 kb on + strand, within PS417_17660 at 3856.171 kb on - strand, within PS417_17660 at 3856.261 kb on - strand, within PS417_17660 at 3856.320 kb on + strand at 3856.320 kb on + strand at 3856.510 kb on - strand at 3856.641 kb on + strand, within PS417_17665 at 3856.641 kb on + strand, within PS417_17665 at 3856.641 kb on + strand, within PS417_17665 at 3856.641 kb on + strand at 3856.759 kb on - strand, within PS417_17665 at 3856.914 kb on + strand, within PS417_17665 at 3856.915 kb on - strand, within PS417_17665 at 3856.918 kb on - strand, within PS417_17665 at 3857.298 kb on + strand at 3857.299 kb on - strand at 3857.299 kb on - strand at 3857.528 kb on - strand, within PS417_17670 at 3857.704 kb on + strand, within PS417_17670 at 3857.704 kb on + strand, within PS417_17670 at 3857.743 kb on + strand, within PS417_17670 at 3857.744 kb on - strand, within PS417_17670 at 3857.744 kb on - strand, within PS417_17670 at 3857.756 kb on - strand, within PS417_17670
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 3,855,681 + PS417_17660 0.37 -0.3 3,855,682 - PS417_17660 0.37 -1.7 3,855,745 - PS417_17660 0.42 -1.1 3,855,762 + PS417_17660 0.44 -0.1 3,855,763 - PS417_17660 0.44 +3.8 3,855,840 + PS417_17660 0.50 -1.1 3,855,840 + PS417_17660 0.50 +0.5 3,855,841 - PS417_17660 0.50 +1.9 3,855,913 + PS417_17660 0.56 -1.8 3,856,074 + PS417_17660 0.70 -1.6 3,856,074 + PS417_17660 0.70 -0.9 3,856,170 + PS417_17660 0.78 -0.2 3,856,171 - PS417_17660 0.78 -0.5 3,856,261 - PS417_17660 0.85 +2.2 3,856,320 + +0.1 3,856,320 + +0.7 3,856,510 - -2.5 3,856,641 + PS417_17665 0.17 +0.5 3,856,641 + PS417_17665 0.17 +0.7 3,856,641 + PS417_17665 0.17 -1.2 3,856,641 + -0.6 3,856,759 - PS417_17665 0.30 +0.8 3,856,914 + PS417_17665 0.48 +0.4 3,856,915 - PS417_17665 0.49 -0.3 3,856,918 - PS417_17665 0.49 -0.9 3,857,298 + +2.2 3,857,299 - -0.4 3,857,299 - -0.0 3,857,528 - PS417_17670 0.17 +0.7 3,857,704 + PS417_17670 0.34 -1.3 3,857,704 + PS417_17670 0.34 +2.5 3,857,743 + PS417_17670 0.38 -0.5 3,857,744 - PS417_17670 0.38 +1.2 3,857,744 - PS417_17670 0.38 -2.7 3,857,756 - PS417_17670 0.39 +0.2
Or see this region's nucleotide sequence