Strain Fitness in Pseudomonas simiae WCS417 around PS417_16515

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16510 and PS417_16515 are separated by 29 nucleotidesPS417_16515 and PS417_16520 are separated by 224 nucleotidesPS417_16520 and PS417_16525 are separated by 81 nucleotides PS417_16510: PS417_16510 - Clp protease ClpX, at 3,606,307 to 3,608,577 _16510 PS417_16515: PS417_16515 - Clp protease ClpS, at 3,608,607 to 3,608,975 _16515 PS417_16520: PS417_16520 - cold-shock protein, at 3,609,200 to 3,609,478 _16520 PS417_16525: PS417_16525 - isocitrate dehydrogenase, at 3,609,560 to 3,610,816 _16525 Position (kb) 3608 3609Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3608.107 kb on - strandat 3608.107 kb on - strand, within PS417_16510at 3608.169 kb on - strand, within PS417_16510at 3608.169 kb on - strand, within PS417_16510at 3608.373 kb on + strandat 3608.374 kb on - strandat 3608.577 kb on + strandat 3608.715 kb on + strand, within PS417_16515at 3608.749 kb on - strand, within PS417_16515at 3609.005 kb on - strandat 3609.078 kb on + strandat 3609.079 kb on - strandat 3609.088 kb on - strandat 3609.088 kb on - strandat 3609.128 kb on + strandat 3609.128 kb on + strandat 3609.162 kb on + strandat 3609.162 kb on + strandat 3609.163 kb on - strandat 3609.199 kb on + strandat 3609.200 kb on - strandat 3609.200 kb on - strandat 3609.302 kb on + strand, within PS417_16520at 3609.302 kb on + strand, within PS417_16520at 3609.303 kb on - strand, within PS417_16520at 3609.457 kb on - strandat 3609.561 kb on + strandat 3609.562 kb on - strandat 3609.562 kb on - strandat 3609.565 kb on + strandat 3609.566 kb on - strandat 3609.566 kb on - strandat 3609.623 kb on - strandat 3609.639 kb on + strandat 3609.639 kb on + strandat 3609.639 kb on + strandat 3609.639 kb on + strandat 3609.640 kb on - strandat 3609.640 kb on - strandat 3609.640 kb on - strandat 3609.644 kb on + strandat 3609.644 kb on + strandat 3609.777 kb on + strand, within PS417_16525at 3609.777 kb on + strand, within PS417_16525at 3609.790 kb on + strand, within PS417_16525at 3609.888 kb on + strand, within PS417_16525at 3609.889 kb on - strand, within PS417_16525at 3609.939 kb on - strand, within PS417_16525at 3609.939 kb on - strand, within PS417_16525at 3609.939 kb on - strand, within PS417_16525

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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3,608,107 - -0.1
3,608,107 - PS417_16510 0.79 -2.3
3,608,169 - PS417_16510 0.82 -1.1
3,608,169 - PS417_16510 0.82 -1.6
3,608,373 + -2.9
3,608,374 - -2.2
3,608,577 + +1.0
3,608,715 + PS417_16515 0.29 -2.2
3,608,749 - PS417_16515 0.38 -1.2
3,609,005 - +1.2
3,609,078 + -1.3
3,609,079 - +0.1
3,609,088 - -1.2
3,609,088 - +2.0
3,609,128 + -3.1
3,609,128 + +0.6
3,609,162 + -0.1
3,609,162 + -2.5
3,609,163 - +2.2
3,609,199 + +0.2
3,609,200 - +0.2
3,609,200 - -0.1
3,609,302 + PS417_16520 0.37 +0.3
3,609,302 + PS417_16520 0.37 +0.2
3,609,303 - PS417_16520 0.37 -2.1
3,609,457 - +0.2
3,609,561 + -0.2
3,609,562 - -0.9
3,609,562 - -0.2
3,609,565 + -3.5
3,609,566 - -2.8
3,609,566 - -1.5
3,609,623 - +0.4
3,609,639 + -0.9
3,609,639 + -2.1
3,609,639 + -0.6
3,609,639 + +0.6
3,609,640 - +0.6
3,609,640 - -1.1
3,609,640 - -0.7
3,609,644 + -2.2
3,609,644 + -1.7
3,609,777 + PS417_16525 0.17 -1.6
3,609,777 + PS417_16525 0.17 +1.9
3,609,790 + PS417_16525 0.18 -0.5
3,609,888 + PS417_16525 0.26 -1.0
3,609,889 - PS417_16525 0.26 -0.9
3,609,939 - PS417_16525 0.30 +2.0
3,609,939 - PS417_16525 0.30 -1.1
3,609,939 - PS417_16525 0.30 -0.6

Or see this region's nucleotide sequence