Strain Fitness in Pseudomonas simiae WCS417 around PS417_15170
Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2'-Deoxyinosine 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
3,322,968 | + | -0.1 | |||
3,322,969 | - | PS417_15165 | 0.35 | -0.8 | |
3,322,994 | + | PS417_15165 | 0.37 | +0.6 | |
3,322,994 | + | PS417_15165 | 0.37 | -1.8 | |
3,323,542 | + | PS417_15165 | 0.86 | -1.4 | |
3,323,694 | + | -0.2 | |||
3,323,695 | - | +1.2 | |||
3,323,752 | + | +0.8 | |||
3,323,879 | - | -0.4 | |||
3,323,905 | + | -0.3 | |||
3,323,905 | + | +0.8 | |||
3,324,001 | - | PS417_15170 | 0.11 | +1.4 | |
3,324,095 | + | PS417_15170 | 0.17 | +0.6 | |
3,324,124 | + | PS417_15170 | 0.19 | -1.5 | |
3,324,214 | + | +1.2 | |||
3,324,794 | + | PS417_15170 | 0.58 | -2.2 | |
3,324,795 | - | PS417_15170 | 0.58 | -0.0 | |
3,324,847 | + | PS417_15170 | 0.61 | -0.6 | |
3,324,847 | + | PS417_15170 | 0.61 | +0.6 | |
3,324,848 | - | PS417_15170 | 0.61 | +0.4 | |
3,324,848 | - | PS417_15170 | 0.61 | +0.6 | |
3,325,014 | - | PS417_15170 | 0.71 | +0.4 | |
3,325,238 | + | PS417_15170 | 0.84 | +0.1 | |
3,325,330 | + | -0.1 | |||
3,325,357 | + | -0.1 | |||
3,325,357 | + | +1.0 | |||
3,325,500 | + | -1.6 | |||
3,325,501 | - | -0.9 | |||
3,325,501 | - | -0.6 |
Or see this region's nucleotide sequence