Strain Fitness in Pseudomonas simiae WCS417 around PS417_12660

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12655 and PS417_12660 overlap by 1 nucleotidesPS417_12660 and PS417_12665 are separated by 273 nucleotides PS417_12655: PS417_12655 - methionine aminopeptidase, at 2,755,847 to 2,756,596 _12655 PS417_12660: PS417_12660 - hypothetical protein, at 2,756,596 to 2,756,796 _12660 PS417_12665: PS417_12665 - hypothetical protein, at 2,757,070 to 2,758,092 _12665 Position (kb) 2756 2757Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2755.656 kb on - strandat 2755.664 kb on - strandat 2756.252 kb on - strand, within PS417_12655at 2756.268 kb on + strand, within PS417_12655at 2756.268 kb on + strand, within PS417_12655at 2756.268 kb on + strand, within PS417_12655at 2756.269 kb on - strand, within PS417_12655at 2756.658 kb on - strand, within PS417_12660at 2756.756 kb on - strand, within PS417_12660at 2756.955 kb on + strandat 2756.955 kb on + strandat 2756.956 kb on - strandat 2756.956 kb on - strandat 2756.956 kb on - strandat 2757.058 kb on + strandat 2757.058 kb on + strandat 2757.075 kb on + strandat 2757.122 kb on - strandat 2757.151 kb on + strandat 2757.169 kb on - strandat 2757.274 kb on + strand, within PS417_12665at 2757.275 kb on - strand, within PS417_12665at 2757.437 kb on + strand, within PS417_12665

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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2,755,656 - -0.4
2,755,664 - +0.9
2,756,252 - PS417_12655 0.54 -0.4
2,756,268 + PS417_12655 0.56 -0.7
2,756,268 + PS417_12655 0.56 -0.1
2,756,268 + PS417_12655 0.56 +2.3
2,756,269 - PS417_12655 0.56 +1.3
2,756,658 - PS417_12660 0.31 -1.8
2,756,756 - PS417_12660 0.80 -0.3
2,756,955 + +0.3
2,756,955 + -0.2
2,756,956 - -0.4
2,756,956 - -0.3
2,756,956 - +0.2
2,757,058 + -1.3
2,757,058 + -3.9
2,757,075 + -0.3
2,757,122 - -0.3
2,757,151 + +0.1
2,757,169 - +0.1
2,757,274 + PS417_12665 0.20 +2.3
2,757,275 - PS417_12665 0.20 -0.8
2,757,437 + PS417_12665 0.36 -1.0

Or see this region's nucleotide sequence