Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11235 and PS417_11240 are separated by 217 nucleotides PS417_11240 and PS417_11245 overlap by 4 nucleotides PS417_11245 and PS417_11250 are separated by 37 nucleotides PS417_11250 and PS417_11255 overlap by 4 nucleotides
PS417_11235: PS417_11235 - hypothetical protein, at 2,409,177 to 2,409,476
_11235
PS417_11240: PS417_11240 - VreA, at 2,409,694 to 2,410,338
_11240
PS417_11245: PS417_11245 - RNA polymerase subunit sigma-24, at 2,410,335 to 2,410,880
_11245
PS417_11250: PS417_11250 - iron dicitrate transport regulator FecR, at 2,410,918 to 2,411,844
_11250
PS417_11255: PS417_11255 - general secretion pathway protein GspJ, at 2,411,841 to 2,412,452
_11255
Position (kb)
2410
2411 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2409.528 kb on - strand at 2409.575 kb on + strand at 2409.793 kb on + strand, within PS417_11240 at 2409.932 kb on - strand at 2410.383 kb on + strand at 2410.459 kb on - strand, within PS417_11245 at 2410.680 kb on + strand, within PS417_11245 at 2410.681 kb on - strand, within PS417_11245 at 2410.779 kb on - strand, within PS417_11245 at 2410.779 kb on - strand, within PS417_11245 at 2410.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 2,409,528 - +0.4 2,409,575 + +0.7 2,409,793 + PS417_11240 0.15 -1.8 2,409,932 - +2.2 2,410,383 + +1.5 2,410,459 - PS417_11245 0.23 -1.0 2,410,680 + PS417_11245 0.63 -0.9 2,410,681 - PS417_11245 0.63 -0.5 2,410,779 - PS417_11245 0.81 -0.4 2,410,779 - PS417_11245 0.81 -1.3 2,410,878 + -2.5
Or see this region's nucleotide sequence