Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11230 and PS417_11235 are separated by 131 nucleotides PS417_11235 and PS417_11240 are separated by 217 nucleotides PS417_11240 and PS417_11245 overlap by 4 nucleotides
PS417_11230: PS417_11230 - hydroxyacid dehydrogenase, at 2,407,978 to 2,409,045
_11230
PS417_11235: PS417_11235 - hypothetical protein, at 2,409,177 to 2,409,476
_11235
PS417_11240: PS417_11240 - VreA, at 2,409,694 to 2,410,338
_11240
PS417_11245: PS417_11245 - RNA polymerase subunit sigma-24, at 2,410,335 to 2,410,880
_11245
Position (kb)
2409
2410 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2408.324 kb on - strand, within PS417_11230 at 2408.324 kb on - strand, within PS417_11230 at 2408.470 kb on + strand at 2408.471 kb on - strand, within PS417_11230 at 2408.963 kb on - strand at 2409.009 kb on + strand at 2409.109 kb on - strand at 2409.109 kb on - strand at 2409.114 kb on + strand at 2409.162 kb on - strand at 2409.287 kb on + strand, within PS417_11235 at 2409.528 kb on - strand at 2409.575 kb on + strand at 2409.793 kb on + strand, within PS417_11240 at 2409.932 kb on - strand at 2410.383 kb on + strand at 2410.459 kb on - strand, within PS417_11245
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 2,408,324 - PS417_11230 0.32 -0.6 2,408,324 - PS417_11230 0.32 -1.1 2,408,470 + -0.4 2,408,471 - PS417_11230 0.46 -0.8 2,408,963 - -1.0 2,409,009 + +0.1 2,409,109 - +1.6 2,409,109 - -1.0 2,409,114 + +1.3 2,409,162 - -0.4 2,409,287 + PS417_11235 0.37 -0.9 2,409,528 - +0.4 2,409,575 + +0.7 2,409,793 + PS417_11240 0.15 -1.8 2,409,932 - +2.2 2,410,383 + +1.5 2,410,459 - PS417_11245 0.23 -1.0
Or see this region's nucleotide sequence