Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11210 and PS417_11215 are separated by 55 nucleotides PS417_11215 and PS417_11220 are separated by 87 nucleotides PS417_11220 and PS417_11225 overlap by 4 nucleotides
PS417_11210: PS417_11210 - LysR family transcriptional regulator, at 2,404,198 to 2,404,584
_11210
PS417_11215: PS417_11215 - arylesterase, at 2,404,640 to 2,405,458
_11215
PS417_11220: PS417_11220 - signal peptide protein, at 2,405,546 to 2,406,937
_11220
PS417_11225: PS417_11225 - glyoxalase, at 2,406,934 to 2,407,830
_11225
Position (kb)
2405
2406
2407 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2404.931 kb on + strand, within PS417_11215 at 2404.993 kb on + strand, within PS417_11215 at 2405.065 kb on - strand, within PS417_11215 at 2405.149 kb on - strand, within PS417_11215 at 2405.251 kb on - strand, within PS417_11215 at 2405.251 kb on - strand, within PS417_11215 at 2405.422 kb on - strand at 2405.422 kb on - strand at 2405.497 kb on + strand at 2405.526 kb on - strand at 2405.578 kb on - strand at 2405.625 kb on + strand at 2405.671 kb on - strand at 2405.671 kb on - strand at 2405.755 kb on - strand, within PS417_11220 at 2405.874 kb on + strand, within PS417_11220 at 2406.013 kb on + strand at 2406.016 kb on - strand, within PS417_11220 at 2406.171 kb on + strand, within PS417_11220 at 2406.192 kb on + strand, within PS417_11220 at 2406.201 kb on + strand, within PS417_11220 at 2406.201 kb on + strand, within PS417_11220 at 2406.559 kb on - strand, within PS417_11220 at 2406.646 kb on - strand, within PS417_11220 at 2406.766 kb on - strand, within PS417_11220 at 2406.766 kb on - strand, within PS417_11220 at 2407.279 kb on - strand, within PS417_11225 at 2407.624 kb on + strand, within PS417_11225 at 2407.624 kb on + strand, within PS417_11225 at 2407.624 kb on + strand, within PS417_11225 at 2407.625 kb on - strand, within PS417_11225 at 2407.625 kb on - strand, within PS417_11225 at 2407.706 kb on + strand, within PS417_11225 at 2407.724 kb on + strand, within PS417_11225 at 2407.932 kb on - strand at 2407.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 2,404,931 + PS417_11215 0.36 +1.8 2,404,993 + PS417_11215 0.43 -0.9 2,405,065 - PS417_11215 0.52 -0.1 2,405,149 - PS417_11215 0.62 -1.5 2,405,251 - PS417_11215 0.75 -0.3 2,405,251 - PS417_11215 0.75 +0.3 2,405,422 - -2.3 2,405,422 - +0.2 2,405,497 + -1.2 2,405,526 - +0.4 2,405,578 - -1.3 2,405,625 + +2.2 2,405,671 - +0.7 2,405,671 - -1.3 2,405,755 - PS417_11220 0.15 -0.1 2,405,874 + PS417_11220 0.24 +0.0 2,406,013 + -0.6 2,406,016 - PS417_11220 0.34 -0.6 2,406,171 + PS417_11220 0.45 -1.0 2,406,192 + PS417_11220 0.46 -0.1 2,406,201 + PS417_11220 0.47 -0.9 2,406,201 + PS417_11220 0.47 -1.2 2,406,559 - PS417_11220 0.73 +0.3 2,406,646 - PS417_11220 0.79 -0.3 2,406,766 - PS417_11220 0.88 -0.8 2,406,766 - PS417_11220 0.88 -0.8 2,407,279 - PS417_11225 0.38 +0.6 2,407,624 + PS417_11225 0.77 +0.7 2,407,624 + PS417_11225 0.77 -1.9 2,407,624 + PS417_11225 0.77 +0.6 2,407,625 - PS417_11225 0.77 -0.2 2,407,625 - PS417_11225 0.77 +1.0 2,407,706 + PS417_11225 0.86 -1.3 2,407,724 + PS417_11225 0.88 +0.8 2,407,932 - -0.8 2,407,936 + +2.2
Or see this region's nucleotide sequence