Strain Fitness in Pseudomonas simiae WCS417 around PS417_00820

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00810 and PS417_00815 overlap by 4 nucleotidesPS417_00815 and PS417_00820 are separated by 291 nucleotidesPS417_00820 and PS417_00825 are separated by 890 nucleotides PS417_00810: PS417_00810 - RNA polymerase sigma factor, at 179,799 to 180,371 _00810 PS417_00815: PS417_00815 - hypothetical protein, at 180,368 to 180,961 _00815 PS417_00820: PS417_00820 - hypothetical protein, at 181,253 to 181,504 _00820 PS417_00825: PS417_00825 - recombinase RecF, at 182,395 to 183,564 _00825 Position (kb) 181 182Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 181.012 kb on + strandat 181.013 kb on - strandat 181.013 kb on - strandat 181.097 kb on + strandat 181.097 kb on + strandat 181.097 kb on + strandat 181.098 kb on - strandat 181.110 kb on - strandat 181.255 kb on - strandat 181.255 kb on - strandat 181.278 kb on - strandat 181.294 kb on - strand, within PS417_00820at 181.307 kb on + strand, within PS417_00820at 181.307 kb on + strand, within PS417_00820at 181.307 kb on + strand, within PS417_00820at 181.308 kb on - strand, within PS417_00820at 181.308 kb on - strand, within PS417_00820at 181.308 kb on - strand, within PS417_00820at 181.308 kb on - strandat 181.308 kb on - strand, within PS417_00820at 181.350 kb on - strand, within PS417_00820at 181.361 kb on + strand, within PS417_00820at 181.372 kb on + strand, within PS417_00820at 181.373 kb on - strand, within PS417_00820at 181.461 kb on - strand, within PS417_00820at 181.478 kb on + strand, within PS417_00820at 181.498 kb on + strandat 181.499 kb on - strandat 181.562 kb on + strandat 181.562 kb on + strandat 181.593 kb on + strandat 181.745 kb on + strandat 181.785 kb on + strandat 181.785 kb on + strandat 181.785 kb on + strandat 181.786 kb on - strandat 181.887 kb on + strandat 181.942 kb on + strandat 181.942 kb on + strandat 181.942 kb on + strandat 181.943 kb on - strandat 181.943 kb on - strandat 181.943 kb on - strandat 182.021 kb on + strandat 182.095 kb on - strandat 182.095 kb on - strandat 182.127 kb on + strandat 182.145 kb on + strandat 182.154 kb on - strandat 182.154 kb on - strandat 182.154 kb on - strandat 182.230 kb on - strandat 182.230 kb on - strandat 182.230 kb on - strandat 182.230 kb on - strandat 182.306 kb on + strandat 182.306 kb on + strandat 182.328 kb on - strandat 182.362 kb on + strandat 182.362 kb on + strandat 182.363 kb on - strandat 182.363 kb on - strandat 182.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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181,012 + +0.5
181,013 - -1.6
181,013 - -1.1
181,097 + +0.3
181,097 + +1.9
181,097 + +0.3
181,098 - -1.2
181,110 - +0.2
181,255 - +0.3
181,255 - -1.6
181,278 - +0.9
181,294 - PS417_00820 0.16 +0.7
181,307 + PS417_00820 0.21 -1.8
181,307 + PS417_00820 0.21 -0.4
181,307 + PS417_00820 0.21 +1.1
181,308 - PS417_00820 0.22 +0.5
181,308 - PS417_00820 0.22 +4.7
181,308 - PS417_00820 0.22 +0.5
181,308 - -0.7
181,308 - PS417_00820 0.22 +1.2
181,350 - PS417_00820 0.38 +1.3
181,361 + PS417_00820 0.43 +0.0
181,372 + PS417_00820 0.47 -0.3
181,373 - PS417_00820 0.48 -0.4
181,461 - PS417_00820 0.83 +0.3
181,478 + PS417_00820 0.89 +2.2
181,498 + -0.8
181,499 - -2.3
181,562 + -0.5
181,562 + -0.4
181,593 + -0.9
181,745 + -2.1
181,785 + -0.5
181,785 + -0.9
181,785 + +0.5
181,786 - -0.9
181,887 + -1.0
181,942 + +1.2
181,942 + -0.9
181,942 + +0.0
181,943 - -0.1
181,943 - +0.9
181,943 - -1.0
182,021 + +0.2
182,095 - +0.4
182,095 - -1.0
182,127 + -0.4
182,145 + +1.8
182,154 - +0.3
182,154 - +0.6
182,154 - -0.8
182,230 - -0.3
182,230 - +1.3
182,230 - -0.6
182,230 - +0.2
182,306 + -0.8
182,306 + -2.3
182,328 - +0.1
182,362 + -0.1
182,362 + +0.0
182,363 - -0.1
182,363 - +1.3
182,389 - -0.2

Or see this region's nucleotide sequence