Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00770 and PS417_00775 are separated by 63 nucleotides PS417_00775 and PS417_00780 are separated by 15 nucleotides PS417_00780 and PS417_00785 are separated by 272 nucleotides
PS417_00770: PS417_00770 - autotransporter, at 171,401 to 173,989
_00770
PS417_00775: PS417_00775 - hypothetical protein, at 174,053 to 174,640
_00775
PS417_00780: PS417_00780 - hypothetical protein, at 174,656 to 175,267
_00780
PS417_00785: PS417_00785 - hypothetical protein, at 175,540 to 176,121
_00785
Position (kb) 174
175 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 173.324 kb on + strand, within PS417_00770 at 173.331 kb on - strand, within PS417_00770 at 173.331 kb on - strand, within PS417_00770 at 173.492 kb on - strand, within PS417_00770 at 173.547 kb on - strand, within PS417_00770 at 173.624 kb on + strand, within PS417_00770 at 173.672 kb on + strand, within PS417_00770 at 173.807 kb on + strand at 173.808 kb on - strand at 173.808 kb on - strand at 173.860 kb on + strand at 173.861 kb on - strand at 173.861 kb on - strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.888 kb on + strand at 173.889 kb on - strand at 173.889 kb on - strand at 173.922 kb on - strand at 173.922 kb on - strand at 173.988 kb on - strand at 173.997 kb on + strand at 173.997 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.006 kb on - strand at 174.088 kb on + strand at 174.088 kb on + strand at 174.313 kb on - strand, within PS417_00775 at 174.313 kb on - strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.493 kb on + strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.657 kb on + strand at 174.757 kb on - strand, within PS417_00780 at 174.757 kb on - strand, within PS417_00780 at 174.770 kb on - strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.961 kb on + strand, within PS417_00780 at 175.026 kb on + strand, within PS417_00780 at 175.200 kb on + strand, within PS417_00780 at 175.201 kb on - strand, within PS417_00780 at 175.201 kb on - strand, within PS417_00780 at 175.322 kb on - strand at 175.360 kb on - strand at 175.360 kb on - strand at 175.397 kb on + strand at 175.425 kb on + strand at 175.425 kb on + strand at 175.426 kb on - strand at 175.506 kb on + strand at 175.506 kb on + strand at 175.556 kb on + strand at 175.603 kb on + strand, within PS417_00785 at 175.603 kb on + strand, within PS417_00785 at 175.604 kb on - strand, within PS417_00785 at 175.606 kb on + strand, within PS417_00785 at 175.606 kb on + strand, within PS417_00785 at 175.606 kb on + strand, within PS417_00785 at 175.607 kb on - strand at 175.607 kb on - strand, within PS417_00785 at 175.607 kb on - strand, within PS417_00785
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 173,324 + PS417_00770 0.74 -0.5 173,331 - PS417_00770 0.75 -0.8 173,331 - PS417_00770 0.75 +0.9 173,492 - PS417_00770 0.81 +1.3 173,547 - PS417_00770 0.83 +0.2 173,624 + PS417_00770 0.86 -0.7 173,672 + PS417_00770 0.88 -1.3 173,807 + -1.8 173,808 - -2.5 173,808 - -0.2 173,860 + -0.8 173,861 - -0.8 173,861 - -1.0 173,864 + +0.2 173,864 + +0.2 173,864 + +0.7 173,864 + -0.8 173,864 + +0.1 173,864 + +1.2 173,864 + +0.0 173,864 + +0.6 173,864 + +0.2 173,865 - +1.2 173,865 - -2.1 173,865 - -0.6 173,865 - +0.1 173,888 + +1.3 173,889 - +0.2 173,889 - +0.5 173,922 - -0.5 173,922 - +0.2 173,988 - +0.6 173,997 + -0.3 173,997 + +1.7 174,005 + -1.9 174,005 + -1.3 174,005 + -0.3 174,006 - +2.6 174,088 + +0.3 174,088 + +0.7 174,313 - PS417_00775 0.44 +1.3 174,313 - PS417_00775 0.44 +0.3 174,345 + PS417_00775 0.50 +0.5 174,345 + -0.5 174,345 + PS417_00775 0.50 -1.4 174,345 + PS417_00775 0.50 -0.2 174,345 + PS417_00775 0.50 -0.5 174,345 + PS417_00775 0.50 -1.5 174,346 - PS417_00775 0.50 -0.2 174,346 - PS417_00775 0.50 -0.4 174,346 - PS417_00775 0.50 -1.3 174,493 + PS417_00775 0.75 -2.2 174,494 - PS417_00775 0.75 +0.0 174,494 - PS417_00775 0.75 -2.6 174,494 - PS417_00775 0.75 +1.3 174,501 + PS417_00775 0.76 -1.8 174,501 + PS417_00775 0.76 -1.1 174,501 + PS417_00775 0.76 -0.3 174,501 + PS417_00775 0.76 +0.0 174,502 - PS417_00775 0.76 -0.4 174,502 - PS417_00775 0.76 -0.3 174,502 - PS417_00775 0.76 -1.4 174,657 + +0.3 174,757 - PS417_00780 0.17 -0.1 174,757 - PS417_00780 0.17 -0.8 174,770 - PS417_00780 0.19 -0.5 174,864 + PS417_00780 0.34 -0.3 174,864 + PS417_00780 0.34 -1.6 174,864 + PS417_00780 0.34 +0.4 174,865 - PS417_00780 0.34 +2.3 174,865 - PS417_00780 0.34 +3.3 174,865 - PS417_00780 0.34 -1.3 174,961 + PS417_00780 0.50 +0.6 175,026 + PS417_00780 0.60 +0.3 175,200 + PS417_00780 0.89 +0.4 175,201 - PS417_00780 0.89 +0.7 175,201 - PS417_00780 0.89 +2.1 175,322 - +0.3 175,360 - -0.7 175,360 - +0.5 175,397 + -0.5 175,425 + -0.8 175,425 + -0.1 175,426 - +0.0 175,506 + -0.5 175,506 + -2.3 175,556 + -1.1 175,603 + PS417_00785 0.11 -0.9 175,603 + PS417_00785 0.11 +0.3 175,604 - PS417_00785 0.11 +1.4 175,606 + PS417_00785 0.11 +0.3 175,606 + PS417_00785 0.11 -1.1 175,606 + PS417_00785 0.11 -1.0 175,607 - +2.3 175,607 - PS417_00785 0.12 +2.8 175,607 - PS417_00785 0.12 +0.6
Or see this region's nucleotide sequence