Strain Fitness in Pseudomonas simiae WCS417 around PS417_05585

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05580 and PS417_05585 are separated by 327 nucleotidesPS417_05585 and PS417_05590 are separated by 142 nucleotides PS417_05580: PS417_05580 - glycerol uptake facilitator GlpF, at 1,256,214 to 1,257,071 _05580 PS417_05585: PS417_05585 - hypothetical protein, at 1,257,399 to 1,257,869 _05585 PS417_05590: PS417_05590 - iron ABC transporter ATP-binding protein, at 1,258,012 to 1,259,121 _05590 Position (kb) 1257 1258Strain fitness (log2 ratio) -2 -1 0 1 2at 1256.650 kb on + strand, within PS417_05580at 1256.651 kb on - strand, within PS417_05580at 1256.654 kb on + strand, within PS417_05580at 1256.654 kb on + strand, within PS417_05580at 1256.655 kb on - strand, within PS417_05580at 1256.750 kb on - strand, within PS417_05580at 1256.797 kb on + strand, within PS417_05580at 1256.797 kb on + strand, within PS417_05580at 1256.797 kb on + strandat 1256.797 kb on + strand, within PS417_05580at 1256.797 kb on + strand, within PS417_05580at 1256.797 kb on + strand, within PS417_05580at 1256.797 kb on + strand, within PS417_05580at 1256.797 kb on + strand, within PS417_05580at 1256.798 kb on - strand, within PS417_05580at 1256.798 kb on - strand, within PS417_05580at 1256.798 kb on - strand, within PS417_05580at 1256.847 kb on - strand, within PS417_05580at 1256.861 kb on + strand, within PS417_05580at 1256.893 kb on + strand, within PS417_05580at 1256.928 kb on - strand, within PS417_05580at 1257.167 kb on + strandat 1257.196 kb on - strandat 1257.196 kb on - strandat 1257.201 kb on - strandat 1257.218 kb on + strandat 1257.219 kb on - strandat 1257.277 kb on - strandat 1257.323 kb on - strandat 1257.323 kb on - strandat 1257.337 kb on + strandat 1257.456 kb on + strand, within PS417_05585at 1257.484 kb on - strand, within PS417_05585at 1257.484 kb on - strand, within PS417_05585at 1257.833 kb on + strandat 1257.833 kb on + strandat 1257.929 kb on + strandat 1258.009 kb on + strandat 1258.010 kb on - strandat 1258.010 kb on - strandat 1258.325 kb on + strand, within PS417_05590at 1258.400 kb on + strand, within PS417_05590at 1258.400 kb on + strand, within PS417_05590at 1258.427 kb on + strand, within PS417_05590at 1258.427 kb on + strand, within PS417_05590at 1258.458 kb on - strand, within PS417_05590at 1258.850 kb on + strand, within PS417_05590at 1258.850 kb on + strand, within PS417_05590

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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1,256,650 + PS417_05580 0.51 -0.7
1,256,651 - PS417_05580 0.51 +1.3
1,256,654 + PS417_05580 0.51 -1.5
1,256,654 + PS417_05580 0.51 +0.5
1,256,655 - PS417_05580 0.51 +1.9
1,256,750 - PS417_05580 0.62 +0.5
1,256,797 + PS417_05580 0.68 -1.5
1,256,797 + PS417_05580 0.68 -2.2
1,256,797 + +2.3
1,256,797 + PS417_05580 0.68 -1.0
1,256,797 + PS417_05580 0.68 -1.6
1,256,797 + PS417_05580 0.68 -1.3
1,256,797 + PS417_05580 0.68 +0.7
1,256,797 + PS417_05580 0.68 +0.2
1,256,798 - PS417_05580 0.68 -0.1
1,256,798 - PS417_05580 0.68 -1.2
1,256,798 - PS417_05580 0.68 -0.4
1,256,847 - PS417_05580 0.74 +0.2
1,256,861 + PS417_05580 0.75 +1.3
1,256,893 + PS417_05580 0.79 -1.6
1,256,928 - PS417_05580 0.83 -2.4
1,257,167 + -0.0
1,257,196 - +2.3
1,257,196 - +0.1
1,257,201 - -0.2
1,257,218 + -0.4
1,257,219 - -0.3
1,257,277 - -0.3
1,257,323 - -1.2
1,257,323 - +0.2
1,257,337 + -0.9
1,257,456 + PS417_05585 0.12 -0.8
1,257,484 - PS417_05585 0.18 -1.0
1,257,484 - PS417_05585 0.18 -2.7
1,257,833 + +1.1
1,257,833 + +0.1
1,257,929 + +0.2
1,258,009 + -1.0
1,258,010 - +1.3
1,258,010 - +0.8
1,258,325 + PS417_05590 0.28 -0.8
1,258,400 + PS417_05590 0.35 -2.4
1,258,400 + PS417_05590 0.35 +0.3
1,258,427 + PS417_05590 0.37 -0.6
1,258,427 + PS417_05590 0.37 +0.9
1,258,458 - PS417_05590 0.40 -2.2
1,258,850 + PS417_05590 0.75 -0.5
1,258,850 + PS417_05590 0.75 +0.1

Or see this region's nucleotide sequence