Strain Fitness in Pseudomonas simiae WCS417 around PS417_17710

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17705 and PS417_17710 overlap by 4 nucleotidesPS417_17710 and PS417_17715 are separated by 140 nucleotides PS417_17705: PS417_17705 - LacI family transcriptional regulator, at 3,864,194 to 3,865,198 _17705 PS417_17710: PS417_17710 - short-chain dehydrogenase, at 3,865,195 to 3,865,920 _17710 PS417_17715: PS417_17715 - actin, at 3,866,061 to 3,867,593 _17715 Position (kb) 3865 3866Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3864.608 kb on + strand, within PS417_17705at 3864.794 kb on - strand, within PS417_17705at 3864.893 kb on + strand, within PS417_17705at 3865.562 kb on - strand, within PS417_17710at 3865.887 kb on + strandat 3865.924 kb on + strandat 3865.924 kb on + strandat 3865.924 kb on + strandat 3865.925 kb on - strandat 3865.925 kb on - strandat 3866.116 kb on + strandat 3866.117 kb on - strandat 3866.117 kb on - strandat 3866.300 kb on + strand, within PS417_17715at 3866.300 kb on + strand, within PS417_17715at 3866.300 kb on + strand, within PS417_17715at 3866.447 kb on - strand, within PS417_17715at 3866.467 kb on + strand, within PS417_17715at 3866.707 kb on + strand, within PS417_17715at 3866.708 kb on - strand, within PS417_17715at 3866.728 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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3,864,608 + PS417_17705 0.41 -2.8
3,864,794 - PS417_17705 0.60 -0.2
3,864,893 + PS417_17705 0.70 -2.6
3,865,562 - PS417_17710 0.51 -1.7
3,865,887 + +0.2
3,865,924 + +0.4
3,865,924 + -0.4
3,865,924 + +0.4
3,865,925 - +1.0
3,865,925 - +0.5
3,866,116 + -0.2
3,866,117 - -1.0
3,866,117 - +0.7
3,866,300 + PS417_17715 0.16 +0.2
3,866,300 + PS417_17715 0.16 +0.6
3,866,300 + PS417_17715 0.16 +1.6
3,866,447 - PS417_17715 0.25 +0.1
3,866,467 + PS417_17715 0.26 +0.4
3,866,707 + PS417_17715 0.42 +1.9
3,866,708 - PS417_17715 0.42 -0.1
3,866,728 + +0.9

Or see this region's nucleotide sequence