Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03105 and PS417_03110 are separated by 19 nucleotides PS417_03110 and PS417_03115 are separated by 332 nucleotides PS417_03115 and PS417_03120 are separated by 58 nucleotides
PS417_03105: PS417_03105 - secretin, at 712,564 to 713,781
_03105
PS417_03110: PS417_03110 - pilus assembly protein CpaB, at 713,801 to 714,742
_03110
PS417_03115: PS417_03115 - pilus assembly protein, at 715,075 to 715,266
_03115
PS417_03120: PS417_03120 - histidine kinase, at 715,325 to 715,729
_03120
Position (kb) 713
714
715 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 712.944 kb on - strand, within PS417_03105 at 712.944 kb on - strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.040 kb on - strand, within PS417_03105 at 713.647 kb on + strand, within PS417_03105 at 713.647 kb on + strand, within PS417_03105 at 713.648 kb on - strand, within PS417_03105 at 713.925 kb on + strand, within PS417_03110 at 714.066 kb on - strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.278 kb on + strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.279 kb on - strand, within PS417_03110 at 714.289 kb on - strand, within PS417_03110 at 714.445 kb on + strand, within PS417_03110 at 714.535 kb on + strand, within PS417_03110 at 714.665 kb on + strand at 714.796 kb on - strand at 714.824 kb on + strand at 714.846 kb on + strand at 714.846 kb on + strand at 714.948 kb on + strand at 714.959 kb on + strand at 714.970 kb on + strand at 715.029 kb on + strand at 715.029 kb on + strand at 715.029 kb on + strand at 715.033 kb on - strand at 715.033 kb on - strand at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.102 kb on + strand, within PS417_03115 at 715.103 kb on - strand, within PS417_03115 at 715.131 kb on + strand, within PS417_03115 at 715.132 kb on - strand, within PS417_03115 at 715.278 kb on + strand at 715.278 kb on + strand at 715.278 kb on + strand at 715.279 kb on - strand at 715.279 kb on - strand at 715.279 kb on - strand at 715.511 kb on - strand, within PS417_03120 at 715.511 kb on - strand, within PS417_03120 at 715.511 kb on - strand, within PS417_03120 at 715.624 kb on + strand, within PS417_03120 at 715.625 kb on - strand, within PS417_03120 at 715.667 kb on + strand, within PS417_03120 at 715.667 kb on + strand, within PS417_03120
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C) remove 712,944 - PS417_03105 0.31 +0.4 712,944 - PS417_03105 0.31 -0.3 713,039 + PS417_03105 0.39 -0.2 713,039 + PS417_03105 0.39 +0.9 713,040 - PS417_03105 0.39 -0.3 713,647 + PS417_03105 0.89 +0.0 713,647 + PS417_03105 0.89 +1.2 713,648 - PS417_03105 0.89 -0.4 713,925 + PS417_03110 0.13 -0.0 714,066 - PS417_03110 0.28 -0.7 714,278 + PS417_03110 0.51 -0.1 714,278 + PS417_03110 0.51 -0.8 714,278 + PS417_03110 0.51 +0.1 714,278 + PS417_03110 0.51 +0.1 714,278 + PS417_03110 0.51 -0.7 714,278 + PS417_03110 0.51 +2.6 714,278 + PS417_03110 0.51 -0.2 714,278 + PS417_03110 0.51 -0.8 714,279 - PS417_03110 0.51 -0.2 714,279 - PS417_03110 0.51 +1.0 714,279 - PS417_03110 0.51 -0.4 714,279 - PS417_03110 0.51 +0.8 714,279 - PS417_03110 0.51 +0.3 714,289 - PS417_03110 0.52 +3.6 714,445 + PS417_03110 0.68 -0.6 714,535 + PS417_03110 0.78 -0.2 714,665 + +0.1 714,796 - +0.7 714,824 + -0.2 714,846 + +0.1 714,846 + -0.1 714,948 + -1.8 714,959 + +0.1 714,970 + -1.5 715,029 + -0.1 715,029 + -0.3 715,029 + -1.0 715,033 - +1.1 715,033 - -1.7 715,102 + PS417_03115 0.14 -0.0 715,102 + PS417_03115 0.14 +0.8 715,102 + PS417_03115 0.14 -0.9 715,102 + PS417_03115 0.14 -0.5 715,102 + PS417_03115 0.14 -0.8 715,103 - PS417_03115 0.15 -1.1 715,131 + PS417_03115 0.29 -0.6 715,132 - PS417_03115 0.30 +0.1 715,278 + +1.6 715,278 + -0.7 715,278 + +1.5 715,279 - +0.8 715,279 - -0.4 715,279 - -0.1 715,511 - PS417_03120 0.46 +1.2 715,511 - PS417_03120 0.46 +0.2 715,511 - PS417_03120 0.46 -0.3 715,624 + PS417_03120 0.74 +0.3 715,625 - PS417_03120 0.74 -0.1 715,667 + PS417_03120 0.84 +0.8 715,667 + PS417_03120 0.84 +0.4
Or see this region's nucleotide sequence