Strain Fitness in Pseudomonas simiae WCS417 around PS417_23075

Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23070 and PS417_23075 are separated by 80 nucleotidesPS417_23075 and PS417_23080 are separated by 152 nucleotidesPS417_23080 and PS417_23085 are separated by 137 nucleotides PS417_23070: PS417_23070 - GMP synthase, at 5,000,503 to 5,002,080 _23070 PS417_23075: PS417_23075 - inosine-5-monophosphate dehydrogenase, at 5,002,161 to 5,003,630 _23075 PS417_23080: PS417_23080 - sugar ABC transporter ATPase, at 5,003,783 to 5,004,331 _23080 PS417_23085: PS417_23085 - permease, at 5,004,469 to 5,005,236 _23085 Position (kb) 5002 5003 5004Strain fitness (log2 ratio) -1 0 1 2at 5003.674 kb on - strandat 5003.728 kb on - strandat 5003.728 kb on - strandat 5003.773 kb on + strandat 5003.773 kb on + strandat 5003.774 kb on - strandat 5003.774 kb on - strandat 5003.774 kb on - strandat 5003.774 kb on - strandat 5003.827 kb on - strandat 5003.827 kb on - strandat 5004.096 kb on + strand, within PS417_23080at 5004.096 kb on + strand, within PS417_23080at 5004.096 kb on + strand, within PS417_23080at 5004.096 kb on + strandat 5004.097 kb on - strand, within PS417_23080at 5004.184 kb on - strand, within PS417_23080at 5004.449 kb on + strandat 5004.482 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C)
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5,003,674 - -0.2
5,003,728 - -0.8
5,003,728 - +0.0
5,003,773 + -0.5
5,003,773 + +0.8
5,003,774 - -0.7
5,003,774 - -0.3
5,003,774 - +0.5
5,003,774 - +1.5
5,003,827 - -1.2
5,003,827 - -0.4
5,004,096 + PS417_23080 0.57 +1.2
5,004,096 + PS417_23080 0.57 +2.1
5,004,096 + PS417_23080 0.57 +0.7
5,004,096 + +0.2
5,004,097 - PS417_23080 0.57 +0.4
5,004,184 - PS417_23080 0.73 -0.3
5,004,449 + -0.5
5,004,482 + +0.1

Or see this region's nucleotide sequence