Strain Fitness in Pseudomonas simiae WCS417 around PS417_18140
Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Deoxyribonucleic from herring sperm 5 mg/mL (C) |
---|---|---|---|---|---|
remove | |||||
3,950,615 | - | +0.5 | |||
3,951,019 | - | PS417_18135 | 0.61 | +0.4 | |
3,951,019 | - | PS417_18135 | 0.61 | +1.6 | |
3,951,262 | + | -0.0 | |||
3,951,262 | + | +0.0 | |||
3,951,263 | - | +0.4 | |||
3,951,350 | + | +0.1 | |||
3,951,453 | - | -1.5 | |||
3,951,478 | + | +0.3 | |||
3,951,479 | - | -0.3 | |||
3,951,579 | + | -0.5 | |||
3,951,627 | + | PS417_18140 | 0.15 | -0.8 | |
3,951,627 | + | PS417_18140 | 0.15 | -1.7 | |
3,951,628 | - | PS417_18140 | 0.15 | -1.1 | |
3,951,658 | - | PS417_18140 | 0.22 | -0.6 | |
3,951,936 | + | PS417_18140 | 0.85 | -0.6 | |
3,951,971 | + | +0.0 | |||
3,952,034 | - | +0.3 | |||
3,952,048 | + | +0.6 | |||
3,952,049 | - | +0.1 | |||
3,952,069 | + | +0.3 | |||
3,952,069 | + | -0.9 | |||
3,952,070 | - | +1.2 | |||
3,952,295 | + | PS417_18145 | 0.18 | -0.8 | |
3,952,309 | + | PS417_18145 | 0.20 | -0.7 | |
3,952,309 | + | PS417_18145 | 0.20 | +0.1 | |
3,952,360 | + | PS417_18145 | 0.24 | -0.1 | |
3,952,908 | + | PS417_18145 | 0.66 | +0.0 |
Or see this region's nucleotide sequence