Strain Fitness in Pseudomonas simiae WCS417 around PS417_17650

Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17645 and PS417_17650 are separated by 104 nucleotidesPS417_17650 and PS417_17655 are separated by 107 nucleotides PS417_17645: PS417_17645 - RND transporter, at 3,851,887 to 3,853,290 _17645 PS417_17650: PS417_17650 - proteinase, at 3,853,395 to 3,854,138 _17650 PS417_17655: PS417_17655 - GntR family transcriptional regulator, at 3,854,246 to 3,855,013 _17655 Position (kb) 3853 3854 3855Strain fitness (log2 ratio) -2 -1 0 1at 3852.503 kb on + strand, within PS417_17645at 3852.892 kb on + strand, within PS417_17645at 3852.995 kb on - strand, within PS417_17645at 3853.229 kb on + strandat 3853.330 kb on + strandat 3853.331 kb on - strandat 3853.682 kb on + strand, within PS417_17650at 3853.738 kb on - strand, within PS417_17650at 3853.848 kb on + strand, within PS417_17650at 3853.885 kb on - strand, within PS417_17650at 3854.246 kb on - strandat 3854.246 kb on - strandat 3854.251 kb on - strandat 3854.523 kb on - strand, within PS417_17655at 3854.820 kb on - strandat 3854.953 kb on + strandat 3854.953 kb on + strandat 3854.954 kb on - strandat 3855.087 kb on + strandat 3855.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C)
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3,852,503 + PS417_17645 0.44 +1.2
3,852,892 + PS417_17645 0.72 +0.6
3,852,995 - PS417_17645 0.79 -0.9
3,853,229 + -0.1
3,853,330 + -0.1
3,853,331 - +0.5
3,853,682 + PS417_17650 0.39 -2.4
3,853,738 - PS417_17650 0.46 -0.2
3,853,848 + PS417_17650 0.61 -1.1
3,853,885 - PS417_17650 0.66 -0.8
3,854,246 - -0.1
3,854,246 - +0.1
3,854,251 - -0.2
3,854,523 - PS417_17655 0.36 -1.0
3,854,820 - +1.6
3,854,953 + +1.2
3,854,953 + -0.3
3,854,954 - +0.4
3,855,087 + -1.0
3,855,087 + -2.2

Or see this region's nucleotide sequence