Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16085 and PS417_16090 are separated by 199 nucleotides PS417_16090 and PS417_16095 are separated by 29 nucleotides PS417_16095 and PS417_16100 overlap by 4 nucleotides
PS417_16085: PS417_16085 - LysR family transcriptional regulator, at 3,526,400 to 3,527,281
_16085
PS417_16090: PS417_16090 - hypothetical protein, at 3,527,481 to 3,528,098
_16090
PS417_16095: PS417_16095 - amidohydrolase, at 3,528,128 to 3,529,966
_16095
PS417_16100: PS417_16100 - antibiotic biosynthesis monooxygenase, at 3,529,963 to 3,530,553
_16100
Position (kb)
3528
3529
3530 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3527.459 kb on + strand at 3527.463 kb on + strand at 3527.478 kb on + strand at 3527.479 kb on - strand at 3527.524 kb on + strand at 3528.021 kb on + strand at 3528.022 kb on - strand, within PS417_16090 at 3528.121 kb on - strand at 3528.121 kb on - strand at 3528.621 kb on + strand, within PS417_16095 at 3528.756 kb on + strand, within PS417_16095 at 3528.756 kb on + strand, within PS417_16095 at 3528.757 kb on - strand, within PS417_16095 at 3529.188 kb on + strand, within PS417_16095 at 3529.243 kb on - strand, within PS417_16095 at 3529.254 kb on + strand, within PS417_16095 at 3529.737 kb on + strand, within PS417_16095 at 3529.738 kb on - strand, within PS417_16095 at 3529.966 kb on + strand at 3530.084 kb on + strand, within PS417_16100 at 3530.359 kb on + strand, within PS417_16100 at 3530.359 kb on + strand, within PS417_16100 at 3530.402 kb on - strand, within PS417_16100 at 3530.402 kb on - strand, within PS417_16100 at 3530.402 kb on - strand, within PS417_16100 at 3530.469 kb on - strand, within PS417_16100 at 3530.627 kb on + strand at 3530.627 kb on + strand at 3530.628 kb on - strand at 3530.628 kb on - strand at 3530.700 kb on - strand at 3530.758 kb on + strand at 3530.758 kb on + strand at 3530.758 kb on + strand at 3530.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C) remove 3,527,459 + +0.3 3,527,463 + -2.4 3,527,478 + -0.4 3,527,479 - +0.4 3,527,524 + +0.2 3,528,021 + -1.6 3,528,022 - PS417_16090 0.88 -0.7 3,528,121 - +0.2 3,528,121 - -1.0 3,528,621 + PS417_16095 0.27 +0.2 3,528,756 + PS417_16095 0.34 +0.6 3,528,756 + PS417_16095 0.34 +0.2 3,528,757 - PS417_16095 0.34 +0.2 3,529,188 + PS417_16095 0.58 -1.4 3,529,243 - PS417_16095 0.61 +0.5 3,529,254 + PS417_16095 0.61 -2.1 3,529,737 + PS417_16095 0.87 -2.0 3,529,738 - PS417_16095 0.88 -0.5 3,529,966 + -1.4 3,530,084 + PS417_16100 0.20 +0.7 3,530,359 + PS417_16100 0.67 +0.8 3,530,359 + PS417_16100 0.67 -0.3 3,530,402 - PS417_16100 0.74 -0.6 3,530,402 - PS417_16100 0.74 +0.1 3,530,402 - PS417_16100 0.74 +0.7 3,530,469 - PS417_16100 0.86 +2.8 3,530,627 + +1.7 3,530,627 + +1.1 3,530,628 - -1.1 3,530,628 - +0.5 3,530,700 - -0.0 3,530,758 + -0.5 3,530,758 + -0.6 3,530,758 + -0.4 3,530,759 - +0.5
Or see this region's nucleotide sequence