Strain Fitness in Pseudomonas simiae WCS417 around PS417_14595

Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14585 and PS417_14590 are separated by 94 nucleotidesPS417_14590 and PS417_14595 overlap by 6 nucleotidesPS417_14595 and PS417_14600 are separated by 116 nucleotidesPS417_14600 and PS417_14605 are separated by 147 nucleotides PS417_14585: PS417_14585 - MFS transporter, at 3,189,216 to 3,190,382 _14585 PS417_14590: PS417_14590 - LysR family transcriptional regulator, at 3,190,477 to 3,191,370 _14590 PS417_14595: PS417_14595 - pyrroline-5-carboxylate reductase, at 3,191,365 to 3,192,138 _14595 PS417_14600: PS417_14600 - bleomycin resistance protein, at 3,192,255 to 3,192,611 _14600 PS417_14605: PS417_14605 - adenylate kinase, at 3,192,759 to 3,193,301 _14605 Position (kb) 3191 3192 3193Strain fitness (log2 ratio) -1 0 1at 3190.384 kb on + strandat 3190.435 kb on + strandat 3190.444 kb on + strandat 3190.511 kb on + strandat 3190.628 kb on + strandat 3190.628 kb on + strand, within PS417_14590at 3190.629 kb on - strand, within PS417_14590at 3190.875 kb on - strand, within PS417_14590at 3191.366 kb on + strandat 3191.368 kb on + strandat 3191.440 kb on - strandat 3191.440 kb on - strandat 3191.608 kb on - strand, within PS417_14595at 3191.639 kb on + strand, within PS417_14595at 3191.892 kb on + strand, within PS417_14595at 3191.893 kb on - strand, within PS417_14595at 3191.893 kb on - strand, within PS417_14595at 3192.177 kb on + strandat 3192.177 kb on + strandat 3192.178 kb on - strandat 3192.178 kb on - strandat 3192.218 kb on - strandat 3192.218 kb on - strandat 3192.269 kb on + strandat 3192.379 kb on - strand, within PS417_14600at 3192.379 kb on - strand, within PS417_14600at 3192.534 kb on - strand, within PS417_14600at 3192.534 kb on - strand, within PS417_14600at 3192.587 kb on - strandat 3192.587 kb on - strandat 3192.682 kb on + strandat 3192.716 kb on + strandat 3192.717 kb on - strandat 3192.773 kb on + strandat 3192.773 kb on + strandat 3192.774 kb on - strandat 3192.862 kb on - strand, within PS417_14605at 3193.106 kb on + strand, within PS417_14605at 3193.107 kb on - strand, within PS417_14605at 3193.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C)
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3,190,384 + +0.5
3,190,435 + +1.2
3,190,444 + -0.2
3,190,511 + +0.6
3,190,628 + +1.1
3,190,628 + PS417_14590 0.17 -1.0
3,190,629 - PS417_14590 0.17 -0.2
3,190,875 - PS417_14590 0.45 +0.5
3,191,366 + -0.1
3,191,368 + -0.4
3,191,440 - -0.2
3,191,440 - +0.1
3,191,608 - PS417_14595 0.31 +0.6
3,191,639 + PS417_14595 0.35 +1.2
3,191,892 + PS417_14595 0.68 +0.5
3,191,893 - PS417_14595 0.68 +0.3
3,191,893 - PS417_14595 0.68 -0.7
3,192,177 + -1.1
3,192,177 + -1.3
3,192,178 - -0.7
3,192,178 - +0.0
3,192,218 - +0.3
3,192,218 - -0.6
3,192,269 + -0.2
3,192,379 - PS417_14600 0.35 +1.2
3,192,379 - PS417_14600 0.35 +0.5
3,192,534 - PS417_14600 0.78 +0.2
3,192,534 - PS417_14600 0.78 -0.7
3,192,587 - +1.0
3,192,587 - -1.2
3,192,682 + +0.5
3,192,716 + -0.4
3,192,717 - +0.0
3,192,773 + -1.3
3,192,773 + -0.7
3,192,774 - +0.1
3,192,862 - PS417_14605 0.19 +0.4
3,193,106 + PS417_14605 0.64 -0.2
3,193,107 - PS417_14605 0.64 -0.7
3,193,107 - -0.5

Or see this region's nucleotide sequence