Strain Fitness in Pseudomonas simiae WCS417 around PS417_00830

Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00825 and PS417_00830 are separated by 5 nucleotidesPS417_00830 and PS417_00835 are separated by 483 nucleotides PS417_00825: PS417_00825 - recombinase RecF, at 182,395 to 183,564 _00825 PS417_00830: PS417_00830 - hypothetical protein, at 183,570 to 184,313 _00830 PS417_00835: PS417_00835 - hypothetical protein, at 184,797 to 185,834 _00835 Position (kb) 183 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.639 kb on - strand, within PS417_00825at 182.695 kb on + strand, within PS417_00825at 182.736 kb on + strand, within PS417_00825at 183.253 kb on - strand, within PS417_00825at 183.683 kb on - strand, within PS417_00830at 183.695 kb on - strand, within PS417_00830at 183.697 kb on + strand, within PS417_00830at 183.737 kb on + strandat 184.121 kb on - strand, within PS417_00830at 184.121 kb on - strand, within PS417_00830at 184.261 kb on - strandat 184.261 kb on - strandat 184.355 kb on + strandat 184.355 kb on + strandat 184.356 kb on - strandat 184.359 kb on + strandat 184.382 kb on - strandat 184.501 kb on + strandat 184.570 kb on - strandat 184.625 kb on - strandat 184.626 kb on + strandat 184.669 kb on + strandat 184.725 kb on + strandat 185.102 kb on + strand, within PS417_00835at 185.158 kb on - strand, within PS417_00835

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C)
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182,639 - PS417_00825 0.21 -2.9
182,695 + PS417_00825 0.26 -0.3
182,736 + PS417_00825 0.29 -0.5
183,253 - PS417_00825 0.73 +1.0
183,683 - PS417_00830 0.15 -2.0
183,695 - PS417_00830 0.17 -0.6
183,697 + PS417_00830 0.17 -0.5
183,737 + +1.5
184,121 - PS417_00830 0.74 -0.8
184,121 - PS417_00830 0.74 -0.7
184,261 - +0.1
184,261 - -2.0
184,355 + +2.7
184,355 + +0.0
184,356 - +0.2
184,359 + -0.0
184,382 - +0.9
184,501 + +0.7
184,570 - +2.5
184,625 - -0.4
184,626 + +1.1
184,669 + +0.5
184,725 + -2.1
185,102 + PS417_00835 0.29 -1.1
185,158 - PS417_00835 0.35 -0.4

Or see this region's nucleotide sequence