Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28385 and PS417_28390 are separated by 185 nucleotides PS417_28390 and PS417_28395 are separated by 10 nucleotides
PS417_28385: PS417_28385 - membrane protein, at 6,126,671 to 6,128,575
_28385
PS417_28390: PS417_28390 - CDP-alcohol phosphatidyltransferase, at 6,128,761 to 6,129,384
_28390
PS417_28395: PS417_28395 - hypothetical protein, at 6,129,395 to 6,131,143
_28395
Position (kb)
6128
6129
6130 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6127.874 kb on + strand, within PS417_28385 at 6127.874 kb on + strand, within PS417_28385 at 6127.875 kb on - strand, within PS417_28385 at 6127.994 kb on - strand, within PS417_28385 at 6128.386 kb on + strand at 6128.386 kb on + strand at 6128.387 kb on - strand at 6128.602 kb on - strand at 6128.641 kb on + strand at 6128.642 kb on - strand at 6128.642 kb on - strand at 6128.658 kb on + strand at 6128.659 kb on - strand at 6128.659 kb on - strand at 6128.773 kb on + strand at 6128.774 kb on - strand at 6129.029 kb on - strand, within PS417_28390 at 6129.228 kb on - strand, within PS417_28390 at 6129.320 kb on - strand, within PS417_28390 at 6129.320 kb on - strand, within PS417_28390 at 6129.692 kb on + strand, within PS417_28395 at 6129.693 kb on - strand, within PS417_28395 at 6129.693 kb on - strand, within PS417_28395 at 6129.828 kb on - strand, within PS417_28395 at 6129.892 kb on + strand, within PS417_28395 at 6129.892 kb on + strand, within PS417_28395 at 6129.893 kb on - strand, within PS417_28395 at 6129.896 kb on + strand, within PS417_28395 at 6129.897 kb on - strand, within PS417_28395 at 6129.944 kb on + strand, within PS417_28395 at 6129.945 kb on - strand, within PS417_28395 at 6130.349 kb on + strand, within PS417_28395 at 6130.350 kb on - strand, within PS417_28395
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 6,127,874 + PS417_28385 0.63 +0.0 6,127,874 + PS417_28385 0.63 -0.1 6,127,875 - PS417_28385 0.63 +0.7 6,127,994 - PS417_28385 0.69 +1.3 6,128,386 + -0.0 6,128,386 + +0.2 6,128,387 - -1.8 6,128,602 - -0.1 6,128,641 + -1.3 6,128,642 - +0.8 6,128,642 - +1.0 6,128,658 + +0.2 6,128,659 - -0.0 6,128,659 - +0.5 6,128,773 + -0.0 6,128,774 - -0.0 6,129,029 - PS417_28390 0.43 +0.1 6,129,228 - PS417_28390 0.75 +0.5 6,129,320 - PS417_28390 0.90 +0.8 6,129,320 - PS417_28390 0.90 +0.3 6,129,692 + PS417_28395 0.17 -0.1 6,129,693 - PS417_28395 0.17 -0.1 6,129,693 - PS417_28395 0.17 -0.4 6,129,828 - PS417_28395 0.25 -2.7 6,129,892 + PS417_28395 0.28 -0.4 6,129,892 + PS417_28395 0.28 +0.2 6,129,893 - PS417_28395 0.28 +0.3 6,129,896 + PS417_28395 0.29 -1.1 6,129,897 - PS417_28395 0.29 +2.3 6,129,944 + PS417_28395 0.31 +0.5 6,129,945 - PS417_28395 0.31 +0.4 6,130,349 + PS417_28395 0.55 -0.9 6,130,350 - PS417_28395 0.55 -0.0
Or see this region's nucleotide sequence