Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24400 and PS417_24405 are separated by 162 nucleotides PS417_24405 and PS417_24410 are separated by 81 nucleotides
PS417_24400: PS417_24400 - peptidase, at 5,296,728 to 5,298,464
_24400
PS417_24405: PS417_24405 - heme acquisition protein HasAp, at 5,298,627 to 5,299,247
_24405
PS417_24410: PS417_24410 - ligand-gated channel, at 5,299,329 to 5,301,986
_24410
Position (kb) 5298
5299
5300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5298.175 kb on + strand, within PS417_24400 at 5298.334 kb on + strand at 5298.334 kb on + strand at 5298.335 kb on - strand at 5298.349 kb on + strand at 5298.350 kb on - strand at 5298.350 kb on - strand at 5298.350 kb on - strand at 5298.419 kb on + strand at 5298.421 kb on + strand at 5298.421 kb on + strand at 5298.422 kb on - strand at 5298.422 kb on - strand at 5298.556 kb on - strand at 5298.580 kb on - strand at 5298.580 kb on - strand at 5298.835 kb on + strand, within PS417_24405 at 5298.850 kb on - strand, within PS417_24405 at 5298.850 kb on - strand, within PS417_24405 at 5298.928 kb on + strand, within PS417_24405 at 5298.998 kb on + strand, within PS417_24405 at 5298.998 kb on + strand, within PS417_24405 at 5299.024 kb on + strand at 5299.025 kb on - strand, within PS417_24405 at 5299.025 kb on - strand, within PS417_24405 at 5299.025 kb on - strand, within PS417_24405 at 5299.172 kb on - strand, within PS417_24405 at 5299.236 kb on - strand at 5299.411 kb on + strand at 5299.411 kb on + strand at 5299.480 kb on + strand at 5299.560 kb on + strand at 5299.560 kb on + strand at 5299.567 kb on + strand at 5299.597 kb on - strand at 5299.597 kb on - strand, within PS417_24410 at 5299.828 kb on + strand, within PS417_24410 at 5299.915 kb on + strand, within PS417_24410 at 5299.916 kb on - strand, within PS417_24410 at 5299.973 kb on + strand, within PS417_24410 at 5299.975 kb on + strand, within PS417_24410 at 5299.975 kb on + strand, within PS417_24410 at 5299.975 kb on + strand, within PS417_24410 at 5299.975 kb on + strand, within PS417_24410 at 5299.976 kb on - strand, within PS417_24410 at 5299.976 kb on - strand, within PS417_24410 at 5299.976 kb on - strand, within PS417_24410 at 5299.976 kb on - strand, within PS417_24410 at 5300.005 kb on + strand, within PS417_24410 at 5300.006 kb on - strand, within PS417_24410 at 5300.198 kb on - strand, within PS417_24410 at 5300.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 5,298,175 + PS417_24400 0.83 +0.3 5,298,334 + +0.6 5,298,334 + +0.0 5,298,335 - +0.5 5,298,349 + -1.4 5,298,350 - -0.2 5,298,350 - -0.5 5,298,350 - -0.4 5,298,419 + +0.0 5,298,421 + -0.2 5,298,421 + -2.4 5,298,422 - +0.3 5,298,422 - -0.5 5,298,556 - -0.3 5,298,580 - -0.1 5,298,580 - -0.3 5,298,835 + PS417_24405 0.33 -0.3 5,298,850 - PS417_24405 0.36 -2.4 5,298,850 - PS417_24405 0.36 +0.9 5,298,928 + PS417_24405 0.48 +0.3 5,298,998 + PS417_24405 0.60 -0.1 5,298,998 + PS417_24405 0.60 -2.8 5,299,024 + +1.6 5,299,025 - PS417_24405 0.64 +0.1 5,299,025 - PS417_24405 0.64 +0.0 5,299,025 - PS417_24405 0.64 -0.0 5,299,172 - PS417_24405 0.88 +0.9 5,299,236 - -0.6 5,299,411 + +0.0 5,299,411 + +1.8 5,299,480 + -0.2 5,299,560 + -0.5 5,299,560 + -0.2 5,299,567 + -1.8 5,299,597 - -1.0 5,299,597 - PS417_24410 0.10 +1.6 5,299,828 + PS417_24410 0.19 +0.3 5,299,915 + PS417_24410 0.22 +0.6 5,299,916 - PS417_24410 0.22 -1.1 5,299,973 + PS417_24410 0.24 -2.5 5,299,975 + PS417_24410 0.24 +1.0 5,299,975 + PS417_24410 0.24 -0.2 5,299,975 + PS417_24410 0.24 -0.2 5,299,975 + PS417_24410 0.24 -0.0 5,299,976 - PS417_24410 0.24 +0.0 5,299,976 - PS417_24410 0.24 +0.6 5,299,976 - PS417_24410 0.24 -0.3 5,299,976 - PS417_24410 0.24 -0.4 5,300,005 + PS417_24410 0.25 +0.8 5,300,006 - PS417_24410 0.25 +0.8 5,300,198 - PS417_24410 0.33 -0.2 5,300,198 - -2.1
Or see this region's nucleotide sequence