Strain Fitness in Pseudomonas simiae WCS417 around PS417_23415
Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Deoxyribonucleic from herring sperm 10 mg/mL (C) |
---|---|---|---|---|---|
remove | |||||
5,068,550 | + | PS417_23410 | 0.15 | -2.3 | |
5,068,551 | - | PS417_23410 | 0.15 | +0.5 | |
5,068,694 | + | PS417_23410 | 0.30 | -0.4 | |
5,068,694 | + | PS417_23410 | 0.30 | +0.1 | |
5,068,695 | - | PS417_23410 | 0.30 | -1.5 | |
5,068,742 | + | PS417_23410 | 0.36 | -0.2 | |
5,068,743 | - | PS417_23410 | 0.36 | +0.7 | |
5,068,766 | + | PS417_23410 | 0.38 | -1.4 | |
5,068,767 | - | -1.5 | |||
5,068,977 | + | PS417_23410 | 0.61 | -0.0 | |
5,069,095 | + | PS417_23410 | 0.74 | -0.1 | |
5,069,096 | - | PS417_23410 | 0.74 | -0.8 | |
5,069,308 | + | +0.7 | |||
5,069,313 | - | -0.1 | |||
5,069,459 | + | +0.1 | |||
5,069,632 | + | PS417_23415 | 0.19 | -0.0 | |
5,069,633 | - | PS417_23415 | 0.19 | -1.2 | |
5,069,768 | - | PS417_23415 | 0.34 | -1.2 | |
5,069,927 | + | PS417_23415 | 0.53 | -2.5 | |
5,070,049 | + | PS417_23415 | 0.66 | +0.7 | |
5,070,049 | + | PS417_23415 | 0.66 | -0.5 | |
5,070,050 | - | PS417_23415 | 0.67 | -1.0 | |
5,070,169 | + | PS417_23415 | 0.80 | -0.3 | |
5,070,169 | + | PS417_23415 | 0.80 | -0.1 | |
5,070,437 | + | +0.2 | |||
5,070,438 | - | -0.5 | |||
5,070,438 | - | -0.1 | |||
5,071,073 | - | PS417_23420 | 0.29 | -0.0 | |
5,071,243 | - | PS417_23420 | 0.36 | -1.2 |
Or see this region's nucleotide sequence