Strain Fitness in Pseudomonas simiae WCS417 around PS417_11775

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11770 and PS417_11775 overlap by 4 nucleotidesPS417_11775 and PS417_11780 are separated by 9 nucleotides PS417_11770: PS417_11770 - pyruvate dehydrogenase, at 2,561,364 to 2,562,383 _11770 PS417_11775: PS417_11775 - acetoin dehydrogenase, at 2,562,380 to 2,563,474 _11775 PS417_11780: PS417_11780 - AraC family transcriptional regulator, at 2,563,484 to 2,564,380 _11780 Position (kb) 2562 2563 2564Strain fitness (log2 ratio) -2 -1 0 1at 2561.382 kb on + strandat 2561.444 kb on + strandat 2561.922 kb on + strand, within PS417_11770at 2561.922 kb on + strand, within PS417_11770at 2561.955 kb on + strand, within PS417_11770at 2561.955 kb on + strandat 2562.315 kb on + strandat 2562.316 kb on - strandat 2562.726 kb on + strand, within PS417_11775at 2562.958 kb on - strand, within PS417_11775at 2563.097 kb on + strand, within PS417_11775at 2563.098 kb on - strand, within PS417_11775at 2563.452 kb on + strandat 2563.472 kb on + strandat 2563.536 kb on + strandat 2563.536 kb on + strandat 2563.845 kb on - strand, within PS417_11780at 2563.845 kb on - strand, within PS417_11780at 2564.079 kb on + strand, within PS417_11780at 2564.127 kb on + strand, within PS417_11780at 2564.127 kb on + strand, within PS417_11780at 2564.128 kb on - strand, within PS417_11780at 2564.128 kb on - strand, within PS417_11780at 2564.220 kb on + strand, within PS417_11780at 2564.400 kb on + strandat 2564.401 kb on - strandat 2564.431 kb on + strandat 2564.431 kb on + strandat 2564.432 kb on - strandat 2564.432 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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2,561,382 + -1.3
2,561,444 + +0.2
2,561,922 + PS417_11770 0.55 -0.6
2,561,922 + PS417_11770 0.55 +0.4
2,561,955 + PS417_11770 0.58 -0.5
2,561,955 + -0.6
2,562,315 + +0.2
2,562,316 - +0.7
2,562,726 + PS417_11775 0.32 -1.2
2,562,958 - PS417_11775 0.53 -0.1
2,563,097 + PS417_11775 0.65 -0.4
2,563,098 - PS417_11775 0.66 -1.3
2,563,452 + -0.9
2,563,472 + +0.3
2,563,536 + -0.4
2,563,536 + -0.3
2,563,845 - PS417_11780 0.40 +0.1
2,563,845 - PS417_11780 0.40 -0.9
2,564,079 + PS417_11780 0.66 +0.7
2,564,127 + PS417_11780 0.72 +0.5
2,564,127 + PS417_11780 0.72 +0.5
2,564,128 - PS417_11780 0.72 +0.7
2,564,128 - PS417_11780 0.72 +1.0
2,564,220 + PS417_11780 0.82 -2.0
2,564,400 + -0.0
2,564,401 - -0.4
2,564,431 + +0.6
2,564,431 + -0.6
2,564,432 - -0.2
2,564,432 - -0.6

Or see this region's nucleotide sequence