Strain Fitness in Pseudomonas simiae WCS417 around PS417_11065
Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Deoxyribonucleic from herring sperm 10 mg/mL (C) |
---|---|---|---|---|---|
remove | |||||
2,371,071 | + | PS417_11060 | 0.38 | +1.1 | |
2,371,115 | - | PS417_11060 | 0.42 | -0.4 | |
2,371,290 | + | PS417_11060 | 0.56 | +0.4 | |
2,371,320 | - | PS417_11060 | 0.59 | +2.0 | |
2,371,320 | - | PS417_11060 | 0.59 | +0.4 | |
2,371,437 | + | PS417_11060 | 0.68 | +1.0 | |
2,371,912 | + | +3.0 | |||
2,372,052 | + | PS417_11065 | 0.16 | -1.7 | |
2,372,052 | + | PS417_11065 | 0.16 | -0.8 | |
2,372,053 | - | PS417_11065 | 0.16 | +0.4 | |
2,372,134 | - | PS417_11065 | 0.26 | -0.2 | |
2,372,376 | + | PS417_11065 | 0.55 | -0.5 | |
2,372,403 | + | PS417_11065 | 0.58 | -1.6 | |
2,372,409 | + | PS417_11065 | 0.59 | -0.0 | |
2,372,409 | + | PS417_11065 | 0.59 | -1.0 | |
2,372,430 | + | PS417_11065 | 0.62 | -2.6 | |
2,372,523 | + | PS417_11065 | 0.73 | +0.6 | |
2,372,524 | - | PS417_11065 | 0.73 | -0.5 | |
2,372,583 | + | PS417_11065 | 0.80 | -0.7 | |
2,372,748 | + | -0.6 | |||
2,372,867 | - | +0.5 | |||
2,372,873 | - | -0.1 | |||
2,373,194 | + | PS417_11070 | 0.35 | -1.0 | |
2,373,540 | + | PS417_11070 | 0.73 | +0.4 | |
2,373,541 | - | -1.0 | |||
2,373,541 | - | +1.0 | |||
2,373,676 | + | PS417_11070 | 0.87 | -0.6 | |
2,373,677 | - | PS417_11070 | 0.88 | +2.0 | |
2,373,677 | - | +1.4 |
Or see this region's nucleotide sequence