Strain Fitness in Pseudomonas simiae WCS417 around PS417_10440
Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Deoxyribonucleic from herring sperm 10 mg/mL (C) |
|---|---|---|---|---|---|
| remove | |||||
| 2,229,568 | - | PS417_10435 | 0.76 | -0.4 | |
| 2,229,626 | + | PS417_10435 | 0.81 | -0.1 | |
| 2,229,627 | - | PS417_10435 | 0.81 | -2.0 | |
| 2,229,943 | + | -0.4 | |||
| 2,230,268 | - | PS417_10440 | 0.16 | +0.4 | |
| 2,230,268 | - | +0.2 | |||
| 2,230,528 | - | PS417_10440 | 0.38 | +2.0 | |
| 2,230,543 | - | PS417_10440 | 0.39 | -0.5 | |
| 2,230,616 | - | PS417_10440 | 0.46 | -1.8 | |
| 2,230,744 | + | PS417_10440 | 0.57 | -0.3 | |
| 2,230,745 | - | PS417_10440 | 0.57 | -0.3 | |
| 2,230,745 | - | PS417_10440 | 0.57 | +0.1 | |
| 2,230,750 | + | PS417_10440 | 0.57 | -0.4 | |
| 2,231,340 | + | PS417_10445 | 0.10 | +0.2 | |
| 2,231,610 | + | PS417_10445 | 0.40 | +0.2 | |
| 2,231,782 | + | PS417_10445 | 0.59 | +1.1 | |
| 2,232,224 | + | -2.1 | |||
| 2,232,224 | + | -0.4 | |||
| 2,232,224 | + | -1.4 | |||
| 2,232,224 | + | -0.0 | |||
| 2,232,224 | + | +2.5 | |||
| 2,232,224 | + | +0.7 | |||
| 2,232,225 | - | +1.5 | |||
| 2,232,225 | - | +0.9 | |||
| 2,232,225 | - | -0.5 | |||
| 2,232,225 | - | +0.3 | |||
| 2,232,225 | - | -0.0 | |||
| 2,232,225 | - | +0.6 | |||
| 2,232,225 | - | +0.3 |
Or see this region's nucleotide sequence