Strain Fitness in Pseudomonas simiae WCS417 around PS417_11310

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11305 and PS417_11310 are separated by 329 nucleotidesPS417_11310 and PS417_11315 are separated by 183 nucleotides PS417_11305: PS417_11305 - general secretion pathway protein GspF, at 2,420,879 to 2,422,090 _11305 PS417_11310: PS417_11310 - alkaline phosphatase, at 2,422,420 to 2,423,601 _11310 PS417_11315: PS417_11315 - hemagglutinin, at 2,423,785 to 2,436,357 _11315 Position (kb) 2422 2423 2424Strain fitness (log2 ratio) -2 -1 0 1 2at 2421.443 kb on + strand, within PS417_11305at 2421.444 kb on - strand, within PS417_11305at 2421.444 kb on - strand, within PS417_11305at 2421.444 kb on - strand, within PS417_11305at 2421.597 kb on - strand, within PS417_11305at 2422.072 kb on - strandat 2422.089 kb on - strandat 2422.118 kb on + strandat 2422.119 kb on - strandat 2422.305 kb on + strandat 2422.393 kb on + strandat 2422.547 kb on + strand, within PS417_11310at 2422.548 kb on - strand, within PS417_11310at 2422.621 kb on + strand, within PS417_11310at 2422.708 kb on + strand, within PS417_11310at 2422.709 kb on - strand, within PS417_11310at 2423.104 kb on + strand, within PS417_11310at 2423.105 kb on - strand, within PS417_11310at 2423.735 kb on + strandat 2424.529 kb on + strandat 2424.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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2,421,443 + PS417_11305 0.47 -1.9
2,421,444 - PS417_11305 0.47 -0.4
2,421,444 - PS417_11305 0.47 +1.6
2,421,444 - PS417_11305 0.47 -0.2
2,421,597 - PS417_11305 0.59 -1.5
2,422,072 - -1.6
2,422,089 - -1.5
2,422,118 + -0.1
2,422,119 - +1.9
2,422,305 + +1.0
2,422,393 + +2.4
2,422,547 + PS417_11310 0.11 -0.6
2,422,548 - PS417_11310 0.11 -0.6
2,422,621 + PS417_11310 0.17 -1.5
2,422,708 + PS417_11310 0.24 +2.4
2,422,709 - PS417_11310 0.24 -1.0
2,423,104 + PS417_11310 0.58 -0.3
2,423,105 - PS417_11310 0.58 +0.8
2,423,735 + +0.0
2,424,529 + +0.2
2,424,588 - +1.4

Or see this region's nucleotide sequence