Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03780 and PS417_03785 are separated by 192 nucleotides PS417_03785 and PS417_03790 overlap by 4 nucleotides PS417_03790 and PS417_03795 are separated by 7 nucleotides PS417_03795 and PS417_03800 are separated by 11 nucleotides
PS417_03780: PS417_03780 - general secretion pathway protein GspH, at 855,976 to 856,557
_03780
PS417_03785: PS417_03785 - pilus assembly protein PilV, at 856,750 to 857,235
_03785
PS417_03790: PS417_03790 - pilus assembly protein PilW, at 857,232 to 857,939
_03790
PS417_03795: PS417_03795 - pilus assembly protein PilX, at 857,947 to 858,477
_03795
PS417_03800: PS417_03800 - pilus assembly protein, at 858,489 to 858,890
_03800
Position (kb)
857
858 Strain fitness (log2 ratio)
-1
0
1
2
3 at 856.557 kb on + strand at 856.558 kb on - strand at 856.558 kb on - strand at 856.594 kb on + strand at 856.594 kb on + strand at 856.594 kb on + strand at 856.595 kb on - strand at 856.595 kb on - strand at 856.595 kb on - strand at 856.597 kb on - strand at 856.641 kb on + strand at 856.642 kb on - strand at 856.685 kb on + strand at 856.895 kb on - strand, within PS417_03785 at 856.939 kb on + strand, within PS417_03785 at 857.327 kb on + strand, within PS417_03790 at 857.610 kb on + strand, within PS417_03790 at 857.611 kb on - strand, within PS417_03790 at 857.673 kb on + strand, within PS417_03790 at 857.674 kb on - strand, within PS417_03790 at 857.901 kb on + strand at 857.902 kb on - strand at 857.965 kb on - strand at 857.965 kb on - strand at 858.097 kb on - strand, within PS417_03795 at 858.259 kb on - strand, within PS417_03795 at 858.330 kb on - strand, within PS417_03795 at 858.412 kb on + strand at 858.413 kb on - strand at 858.423 kb on - strand, within PS417_03795 at 858.423 kb on - strand, within PS417_03795 at 858.423 kb on - strand, within PS417_03795 at 858.512 kb on + strand at 858.513 kb on - strand at 858.661 kb on - strand, within PS417_03800 at 858.681 kb on - strand at 858.681 kb on - strand, within PS417_03800 at 858.720 kb on - strand, within PS417_03800 at 858.720 kb on - strand, within PS417_03800 at 858.765 kb on - strand, within PS417_03800
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 856,557 + +0.9 856,558 - -1.2 856,558 - +0.7 856,594 + +0.7 856,594 + +0.2 856,594 + -0.3 856,595 - +0.7 856,595 - +0.6 856,595 - -0.6 856,597 - +3.3 856,641 + +0.4 856,642 - +2.3 856,685 + -1.1 856,895 - PS417_03785 0.30 -0.0 856,939 + PS417_03785 0.39 -0.8 857,327 + PS417_03790 0.13 +0.8 857,610 + PS417_03790 0.53 -1.4 857,611 - PS417_03790 0.54 -0.7 857,673 + PS417_03790 0.62 +1.0 857,674 - PS417_03790 0.62 +0.7 857,901 + -0.7 857,902 - -0.4 857,965 - -0.2 857,965 - +0.4 858,097 - PS417_03795 0.28 -0.4 858,259 - PS417_03795 0.59 -0.8 858,330 - PS417_03795 0.72 +0.0 858,412 + +2.3 858,413 - +1.3 858,423 - PS417_03795 0.90 -0.6 858,423 - PS417_03795 0.90 +3.7 858,423 - PS417_03795 0.90 +0.6 858,512 + +1.1 858,513 - +0.2 858,661 - PS417_03800 0.43 +0.1 858,681 - +0.3 858,681 - PS417_03800 0.48 -1.1 858,720 - PS417_03800 0.57 +0.7 858,720 - PS417_03800 0.57 -0.1 858,765 - PS417_03800 0.69 +0.4
Or see this region's nucleotide sequence