Strain Fitness in Pseudomonas simiae WCS417 around PS417_03155

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03150 and PS417_03155 are separated by 145 nucleotidesPS417_03155 and PS417_03160 overlap by 4 nucleotides PS417_03150: PS417_03150 - kinase, at 723,269 to 724,165 _03150 PS417_03155: PS417_03155 - transcriptional regulator, at 724,311 to 724,712 _03155 PS417_03160: PS417_03160 - metal ABC transporter ATPase, at 724,709 to 726,910 _03160 Position (kb) 724 725Strain fitness (log2 ratio) -2 -1 0 1 2at 723.362 kb on + strand, within PS417_03150at 723.362 kb on + strand, within PS417_03150at 723.362 kb on + strand, within PS417_03150at 723.362 kb on + strand, within PS417_03150at 723.362 kb on + strand, within PS417_03150at 723.363 kb on - strand, within PS417_03150at 723.621 kb on + strand, within PS417_03150at 723.621 kb on + strand, within PS417_03150at 723.685 kb on - strand, within PS417_03150at 723.838 kb on - strand, within PS417_03150at 723.903 kb on - strand, within PS417_03150at 723.966 kb on - strand, within PS417_03150at 723.997 kb on - strand, within PS417_03150at 723.997 kb on - strand, within PS417_03150at 724.294 kb on + strandat 724.566 kb on - strand, within PS417_03155at 724.600 kb on - strand, within PS417_03155at 724.654 kb on + strand, within PS417_03155at 724.654 kb on + strand, within PS417_03155at 724.860 kb on + strandat 724.860 kb on + strandat 724.899 kb on + strandat 724.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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723,362 + PS417_03150 0.10 +0.3
723,362 + PS417_03150 0.10 +1.7
723,362 + PS417_03150 0.10 -0.5
723,362 + PS417_03150 0.10 +0.4
723,362 + PS417_03150 0.10 +0.9
723,363 - PS417_03150 0.10 -1.8
723,621 + PS417_03150 0.39 +0.9
723,621 + PS417_03150 0.39 -1.1
723,685 - PS417_03150 0.46 +2.3
723,838 - PS417_03150 0.63 +0.3
723,903 - PS417_03150 0.71 +0.4
723,966 - PS417_03150 0.78 -1.3
723,997 - PS417_03150 0.81 -0.1
723,997 - PS417_03150 0.81 +1.4
724,294 + -0.5
724,566 - PS417_03155 0.63 -0.2
724,600 - PS417_03155 0.72 -1.6
724,654 + PS417_03155 0.85 +0.6
724,654 + PS417_03155 0.85 +1.2
724,860 + -0.1
724,860 + -0.4
724,899 + -1.9
724,900 - -1.7

Or see this region's nucleotide sequence