Strain Fitness in Pseudomonas simiae WCS417 around PS417_27950
Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2'-Deoxyinosine 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
6,029,314 | - | PS417_27945 | 0.85 | +1.0 | |
6,029,314 | - | PS417_27945 | 0.85 | +0.3 | |
6,029,584 | - | PS417_27950 | 0.13 | +0.2 | |
6,029,599 | - | PS417_27950 | 0.16 | -0.6 | |
6,029,919 | + | PS417_27950 | 0.79 | +0.3 | |
6,029,919 | + | PS417_27950 | 0.79 | +0.4 | |
6,029,920 | - | PS417_27950 | 0.79 | -0.6 | |
6,029,920 | - | PS417_27950 | 0.79 | -0.4 | |
6,030,040 | + | -2.3 | |||
6,030,335 | + | PS417_27955 | 0.20 | -0.6 | |
6,030,335 | + | PS417_27955 | 0.20 | +2.3 | |
6,030,336 | - | PS417_27955 | 0.21 | +0.4 | |
6,030,471 | - | PS417_27955 | 0.30 | -2.0 | |
6,030,471 | - | PS417_27955 | 0.30 | -0.6 | |
6,030,483 | - | PS417_27955 | 0.30 | +0.2 | |
6,030,527 | + | PS417_27955 | 0.33 | -1.0 | |
6,030,527 | + | PS417_27955 | 0.33 | +0.3 | |
6,030,702 | - | PS417_27955 | 0.45 | +0.0 | |
6,030,857 | + | PS417_27955 | 0.55 | -0.3 | |
6,030,858 | - | PS417_27955 | 0.55 | -0.4 | |
6,030,858 | - | PS417_27955 | 0.55 | -1.4 |
Or see this region's nucleotide sequence