Strain Fitness in Pseudomonas simiae WCS417 around PS417_27950

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27945 and PS417_27950 are separated by 54 nucleotidesPS417_27950 and PS417_27955 are separated by 2 nucleotides PS417_27945: PS417_27945 - type VI secretion protein ImpA, at 6,028,446 to 6,029,465 _27945 PS417_27950: PS417_27950 - hypothetical protein, at 6,029,520 to 6,030,026 _27950 PS417_27955: PS417_27955 - EvpB family type VI secretion protein, at 6,030,029 to 6,031,525 _27955 Position (kb) 6029 6030 6031Strain fitness (log2 ratio) -2 -1 0 1 2at 6029.314 kb on - strand, within PS417_27945at 6029.314 kb on - strand, within PS417_27945at 6029.584 kb on - strand, within PS417_27950at 6029.599 kb on - strand, within PS417_27950at 6029.919 kb on + strand, within PS417_27950at 6029.919 kb on + strand, within PS417_27950at 6029.920 kb on - strand, within PS417_27950at 6029.920 kb on - strand, within PS417_27950at 6030.040 kb on + strandat 6030.335 kb on + strand, within PS417_27955at 6030.335 kb on + strand, within PS417_27955at 6030.336 kb on - strand, within PS417_27955at 6030.471 kb on - strand, within PS417_27955at 6030.471 kb on - strand, within PS417_27955at 6030.483 kb on - strand, within PS417_27955at 6030.527 kb on + strand, within PS417_27955at 6030.527 kb on + strand, within PS417_27955at 6030.702 kb on - strand, within PS417_27955at 6030.857 kb on + strand, within PS417_27955at 6030.858 kb on - strand, within PS417_27955at 6030.858 kb on - strand, within PS417_27955

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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6,029,314 - PS417_27945 0.85 +1.0
6,029,314 - PS417_27945 0.85 +0.3
6,029,584 - PS417_27950 0.13 +0.2
6,029,599 - PS417_27950 0.16 -0.6
6,029,919 + PS417_27950 0.79 +0.3
6,029,919 + PS417_27950 0.79 +0.4
6,029,920 - PS417_27950 0.79 -0.6
6,029,920 - PS417_27950 0.79 -0.4
6,030,040 + -2.3
6,030,335 + PS417_27955 0.20 -0.6
6,030,335 + PS417_27955 0.20 +2.3
6,030,336 - PS417_27955 0.21 +0.4
6,030,471 - PS417_27955 0.30 -2.0
6,030,471 - PS417_27955 0.30 -0.6
6,030,483 - PS417_27955 0.30 +0.2
6,030,527 + PS417_27955 0.33 -1.0
6,030,527 + PS417_27955 0.33 +0.3
6,030,702 - PS417_27955 0.45 +0.0
6,030,857 + PS417_27955 0.55 -0.3
6,030,858 - PS417_27955 0.55 -0.4
6,030,858 - PS417_27955 0.55 -1.4

Or see this region's nucleotide sequence