Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26450 and PS417_26455 are separated by 210 nucleotides PS417_26455 and PS417_26460 are separated by 95 nucleotides
PS417_26450: PS417_26450 - S-adenosylmethionine synthetase, at 5,720,606 to 5,721,796
_26450
PS417_26455: PS417_26455 - hypothetical protein, at 5,722,007 to 5,722,357
_26455
PS417_26460: PS417_26460 - NAD-dependent DNA ligase LigB, at 5,722,453 to 5,724,117
_26460
Position (kb)
5722
5723 Strain fitness (log2 ratio)
-1
0
1
2
3 at 5721.795 kb on - strand at 5721.846 kb on + strand at 5721.846 kb on + strand at 5721.894 kb on - strand at 5721.934 kb on - strand at 5721.934 kb on - strand at 5721.934 kb on - strand at 5721.938 kb on + strand at 5722.315 kb on + strand, within PS417_26455 at 5722.355 kb on + strand at 5722.356 kb on - strand at 5722.359 kb on + strand at 5722.360 kb on - strand at 5722.365 kb on + strand at 5722.365 kb on + strand at 5722.372 kb on + strand at 5722.421 kb on - strand at 5722.478 kb on + strand at 5722.479 kb on - strand at 5722.562 kb on + strand at 5722.562 kb on + strand at 5722.562 kb on + strand at 5722.562 kb on + strand at 5722.582 kb on + strand at 5722.582 kb on + strand at 5722.582 kb on + strand at 5722.583 kb on - strand at 5722.621 kb on + strand, within PS417_26460 at 5722.622 kb on - strand, within PS417_26460 at 5722.622 kb on - strand, within PS417_26460 at 5722.738 kb on - strand, within PS417_26460 at 5723.249 kb on - strand, within PS417_26460
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 5,721,795 - -1.0 5,721,846 + +0.2 5,721,846 + -0.1 5,721,894 - -1.0 5,721,934 - -0.7 5,721,934 - +0.1 5,721,934 - +1.3 5,721,938 + +0.3 5,722,315 + PS417_26455 0.88 -0.8 5,722,355 + -0.3 5,722,356 - +0.1 5,722,359 + -0.6 5,722,360 - -0.5 5,722,365 + +0.6 5,722,365 + +1.3 5,722,372 + -1.4 5,722,421 - +1.2 5,722,478 + +2.9 5,722,479 - +0.8 5,722,562 + +0.2 5,722,562 + -0.7 5,722,562 + +0.5 5,722,562 + -1.6 5,722,582 + +1.5 5,722,582 + +2.3 5,722,582 + +0.1 5,722,583 - -0.1 5,722,621 + PS417_26460 0.10 +1.3 5,722,622 - PS417_26460 0.10 -0.2 5,722,622 - PS417_26460 0.10 -0.5 5,722,738 - PS417_26460 0.17 -0.3 5,723,249 - PS417_26460 0.48 -0.6
Or see this region's nucleotide sequence