Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24070 and PS417_24075 are separated by 86 nucleotides PS417_24075 and PS417_24080 are separated by 98 nucleotides PS417_24080 and PS417_24085 are separated by 63 nucleotides PS417_24085 and PS417_24090 overlap by 8 nucleotides PS417_24090 and PS417_24095 are separated by 168 nucleotides
PS417_24070: PS417_24070 - recombination and repair protein, at 5,212,762 to 5,214,435
_24070
PS417_24075: PS417_24075 - Fur family transcriptional regulator, at 5,214,522 to 5,214,926
_24075
PS417_24080: PS417_24080 - membrane protein, at 5,215,025 to 5,215,552
_24080
PS417_24085: PS417_24085 - protein RnfH, at 5,215,616 to 5,215,918
_24085
PS417_24090: PS417_24090 - ribosome association toxin RatA, at 5,215,911 to 5,216,345
_24090
PS417_24095: PS417_24095 - SsrA-binding protein, at 5,216,514 to 5,216,996
_24095
Position (kb) 5215
5216 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5214.102 kb on + strand, within PS417_24070 at 5214.102 kb on + strand, within PS417_24070 at 5214.103 kb on - strand, within PS417_24070 at 5214.210 kb on + strand, within PS417_24070 at 5214.210 kb on + strand, within PS417_24070 at 5214.210 kb on + strand, within PS417_24070 at 5214.211 kb on - strand, within PS417_24070 at 5214.221 kb on + strand, within PS417_24070 at 5214.221 kb on + strand, within PS417_24070 at 5214.222 kb on - strand, within PS417_24070 at 5214.443 kb on - strand at 5214.443 kb on - strand at 5214.454 kb on + strand at 5214.455 kb on - strand at 5214.456 kb on + strand at 5214.456 kb on + strand at 5214.456 kb on + strand at 5214.457 kb on - strand at 5214.457 kb on - strand at 5214.477 kb on + strand at 5214.478 kb on - strand at 5215.550 kb on + strand at 5215.617 kb on + strand at 5215.618 kb on - strand at 5215.618 kb on - strand at 5215.698 kb on + strand, within PS417_24085 at 5215.751 kb on + strand, within PS417_24085 at 5215.751 kb on + strand, within PS417_24085 at 5215.896 kb on + strand at 5215.896 kb on + strand at 5215.896 kb on + strand at 5215.896 kb on + strand at 5215.897 kb on - strand at 5215.897 kb on - strand at 5215.897 kb on - strand at 5216.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 5,214,102 + PS417_24070 0.80 +1.3 5,214,102 + PS417_24070 0.80 -1.9 5,214,103 - PS417_24070 0.80 +0.6 5,214,210 + PS417_24070 0.86 +0.2 5,214,210 + PS417_24070 0.86 +0.0 5,214,210 + PS417_24070 0.86 -0.3 5,214,211 - PS417_24070 0.87 -1.0 5,214,221 + PS417_24070 0.87 -0.2 5,214,221 + PS417_24070 0.87 -0.2 5,214,222 - PS417_24070 0.87 -0.2 5,214,443 - -0.7 5,214,443 - -0.9 5,214,454 + +1.0 5,214,455 - -0.1 5,214,456 + -0.4 5,214,456 + +0.1 5,214,456 + -1.8 5,214,457 - +0.8 5,214,457 - -0.2 5,214,477 + -0.1 5,214,478 - +0.1 5,215,550 + +0.7 5,215,617 + -1.1 5,215,618 - +1.5 5,215,618 - +1.4 5,215,698 + PS417_24085 0.27 -0.7 5,215,751 + PS417_24085 0.45 -1.1 5,215,751 + PS417_24085 0.45 -2.9 5,215,896 + +1.3 5,215,896 + -0.3 5,215,896 + +0.7 5,215,896 + -0.2 5,215,897 - -0.8 5,215,897 - -0.1 5,215,897 - -1.8 5,216,499 + -0.3
Or see this region's nucleotide sequence