Strain Fitness in Pseudomonas simiae WCS417 around PS417_23070

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_23065 and PS417_23070 are separated by 340 nucleotidesPS417_23070 and PS417_23075 are separated by 80 nucleotides PS417_23065: PS417_23065 - hypothetical protein, at 4,999,605 to 5,000,162 _23065 PS417_23070: PS417_23070 - GMP synthase, at 5,000,503 to 5,002,080 _23070 PS417_23075: PS417_23075 - inosine-5-monophosphate dehydrogenase, at 5,002,161 to 5,003,630 _23075 Position (kb) 5000 5001 5002 5003Strain fitness (log2 ratio) -1 0 1 2 3 4at 4999.672 kb on + strand, within PS417_23065at 4999.790 kb on + strand, within PS417_23065at 4999.862 kb on + strand, within PS417_23065at 4999.862 kb on + strand, within PS417_23065at 4999.862 kb on + strand, within PS417_23065at 4999.862 kb on + strand, within PS417_23065at 4999.863 kb on - strand, within PS417_23065at 4999.878 kb on - strand, within PS417_23065at 4999.901 kb on - strandat 4999.921 kb on + strand, within PS417_23065at 4999.921 kb on + strand, within PS417_23065at 4999.922 kb on - strand, within PS417_23065at 4999.922 kb on - strand, within PS417_23065at 4999.985 kb on - strand, within PS417_23065at 4999.985 kb on - strand, within PS417_23065at 5000.014 kb on - strand, within PS417_23065at 5000.014 kb on - strand, within PS417_23065at 5000.078 kb on + strand, within PS417_23065at 5000.117 kb on + strandat 5000.227 kb on - strandat 5000.382 kb on + strandat 5000.383 kb on - strandat 5000.385 kb on - strandat 5000.387 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
4,999,672 + PS417_23065 0.12 -0.1
4,999,790 + PS417_23065 0.33 -0.1
4,999,862 + PS417_23065 0.46 +0.8
4,999,862 + PS417_23065 0.46 -0.2
4,999,862 + PS417_23065 0.46 +2.4
4,999,862 + PS417_23065 0.46 -1.0
4,999,863 - PS417_23065 0.46 +4.4
4,999,878 - PS417_23065 0.49 -0.8
4,999,901 - +1.4
4,999,921 + PS417_23065 0.57 -0.3
4,999,921 + PS417_23065 0.57 -1.5
4,999,922 - PS417_23065 0.57 -0.8
4,999,922 - PS417_23065 0.57 -0.2
4,999,985 - PS417_23065 0.68 -0.3
4,999,985 - PS417_23065 0.68 +0.4
5,000,014 - PS417_23065 0.73 -1.7
5,000,014 - PS417_23065 0.73 -1.3
5,000,078 + PS417_23065 0.85 -0.5
5,000,117 + -1.6
5,000,227 - +0.0
5,000,382 + -0.6
5,000,383 - +0.2
5,000,385 - -0.2
5,000,387 - +0.4

Or see this region's nucleotide sequence