Strain Fitness in Pseudomonas simiae WCS417 around PS417_22930

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22925 and PS417_22930 are separated by 220 nucleotidesPS417_22930 and PS417_22935 are separated by 12 nucleotides PS417_22925: PS417_22925 - RNA-binding protein, at 4,965,885 to 4,967,261 _22925 PS417_22930: PS417_22930 - cytochrome C assembly protein, at 4,967,482 to 4,968,294 _22930 PS417_22935: PS417_22935 - hypothetical protein, at 4,968,307 to 4,969,545 _22935 Position (kb) 4967 4968 4969Strain fitness (log2 ratio) -1 0 1 2at 4967.288 kb on - strandat 4968.610 kb on + strand, within PS417_22935at 4968.610 kb on + strand, within PS417_22935at 4969.105 kb on + strand, within PS417_22935at 4969.106 kb on - strand, within PS417_22935at 4969.106 kb on - strand, within PS417_22935

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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4,967,288 - +1.1
4,968,610 + PS417_22935 0.24 +2.4
4,968,610 + PS417_22935 0.24 +0.4
4,969,105 + PS417_22935 0.64 +1.7
4,969,106 - PS417_22935 0.64 +1.8
4,969,106 - PS417_22935 0.64 -0.2

Or see this region's nucleotide sequence