Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02045 and PS417_02050 overlap by 4 nucleotides PS417_02050 and PS417_02055 overlap by 4 nucleotides PS417_02055 and PS417_02060 overlap by 4 nucleotides
PS417_02045: PS417_02045 - 3-oxoacyl-ACP synthase, at 458,809 to 459,975
_02045
PS417_02050: PS417_02050 - hypothetical protein, at 459,972 to 460,454
_02050
PS417_02055: PS417_02055 - methyltransferase, at 460,451 to 461,185
_02055
PS417_02060: PS417_02060 - FAD-dependent oxidoreductase, at 461,182 to 462,429
_02060
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.599 kb on + strand, within PS417_02045 at 459.707 kb on + strand, within PS417_02045 at 459.708 kb on - strand, within PS417_02045 at 460.716 kb on + strand, within PS417_02055 at 460.716 kb on + strand, within PS417_02055 at 460.717 kb on - strand, within PS417_02055 at 460.717 kb on - strand, within PS417_02055 at 460.746 kb on + strand, within PS417_02055 at 460.747 kb on - strand, within PS417_02055 at 461.059 kb on + strand, within PS417_02055 at 461.068 kb on + strand, within PS417_02055 at 461.459 kb on - strand, within PS417_02060 at 461.814 kb on + strand, within PS417_02060 at 461.815 kb on - strand, within PS417_02060 at 461.992 kb on + strand, within PS417_02060
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 459,599 + PS417_02045 0.68 +0.9 459,707 + PS417_02045 0.77 -0.2 459,708 - PS417_02045 0.77 +1.3 460,716 + PS417_02055 0.36 +1.3 460,716 + PS417_02055 0.36 -2.3 460,717 - PS417_02055 0.36 +0.8 460,717 - PS417_02055 0.36 +0.3 460,746 + PS417_02055 0.40 +2.3 460,747 - PS417_02055 0.40 -1.4 461,059 + PS417_02055 0.83 -0.5 461,068 + PS417_02055 0.84 -0.3 461,459 - PS417_02060 0.22 -0.4 461,814 + PS417_02060 0.51 +0.5 461,815 - PS417_02060 0.51 -0.1 461,992 + PS417_02060 0.65 -0.2
Or see this region's nucleotide sequence