Strain Fitness in Pseudomonas simiae WCS417 around PS417_20190

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20180 and PS417_20185 overlap by 1 nucleotidesPS417_20185 and PS417_20190 are separated by 21 nucleotidesPS417_20190 and PS417_20195 are separated by 34 nucleotides PS417_20180: PS417_20180 - agmatinase, at 4,384,795 to 4,385,745 _20180 PS417_20185: PS417_20185 - ketosteroid isomerase, at 4,385,745 to 4,386,167 _20185 PS417_20190: PS417_20190 - nitrate reductase, at 4,386,189 to 4,387,700 _20190 PS417_20195: PS417_20195 - sodium:solute symporter, at 4,387,735 to 4,389,117 _20195 Position (kb) 4386 4387 4388Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4385.265 kb on + strand, within PS417_20180at 4385.265 kb on + strand, within PS417_20180at 4385.266 kb on - strand, within PS417_20180at 4385.266 kb on - strand, within PS417_20180at 4385.312 kb on + strand, within PS417_20180at 4385.372 kb on - strand, within PS417_20180at 4385.501 kb on - strand, within PS417_20180at 4385.501 kb on - strand, within PS417_20180at 4385.501 kb on - strand, within PS417_20180at 4385.856 kb on + strand, within PS417_20185at 4385.856 kb on + strand, within PS417_20185at 4385.857 kb on - strand, within PS417_20185at 4385.893 kb on - strand, within PS417_20185at 4386.194 kb on + strandat 4386.194 kb on + strandat 4386.197 kb on + strandat 4386.198 kb on - strandat 4386.209 kb on + strandat 4386.209 kb on + strandat 4386.209 kb on + strandat 4386.210 kb on - strandat 4386.216 kb on - strandat 4386.227 kb on - strandat 4386.267 kb on - strandat 4386.314 kb on + strandat 4386.401 kb on - strand, within PS417_20190at 4386.401 kb on - strand, within PS417_20190at 4386.903 kb on + strand, within PS417_20190at 4386.903 kb on + strand, within PS417_20190at 4386.903 kb on + strand, within PS417_20190at 4386.904 kb on - strand, within PS417_20190at 4386.928 kb on + strand, within PS417_20190at 4387.029 kb on + strand, within PS417_20190at 4387.047 kb on + strand, within PS417_20190at 4387.047 kb on + strand, within PS417_20190at 4387.047 kb on + strand, within PS417_20190at 4387.047 kb on + strand, within PS417_20190at 4387.047 kb on + strand, within PS417_20190at 4387.048 kb on - strand, within PS417_20190at 4387.048 kb on - strand, within PS417_20190at 4387.048 kb on - strand, within PS417_20190at 4387.048 kb on - strand, within PS417_20190at 4387.136 kb on + strand, within PS417_20190at 4387.137 kb on - strand, within PS417_20190at 4387.147 kb on - strand, within PS417_20190at 4387.365 kb on + strand, within PS417_20190at 4387.365 kb on + strand, within PS417_20190at 4387.366 kb on - strand, within PS417_20190at 4387.366 kb on - strand, within PS417_20190at 4387.549 kb on + strandat 4387.549 kb on + strandat 4387.550 kb on - strandat 4387.550 kb on - strandat 4387.550 kb on - strandat 4387.550 kb on - strandat 4387.587 kb on + strandat 4387.587 kb on + strandat 4387.587 kb on + strandat 4387.587 kb on + strandat 4387.748 kb on + strandat 4387.758 kb on - strandat 4387.793 kb on - strandat 4387.828 kb on + strandat 4387.829 kb on - strandat 4387.829 kb on - strandat 4387.829 kb on - strandat 4387.864 kb on + strandat 4387.864 kb on + strandat 4387.864 kb on + strandat 4387.864 kb on + strandat 4387.864 kb on + strandat 4387.864 kb on + strandat 4387.864 kb on + strandat 4387.865 kb on - strandat 4387.865 kb on - strandat 4387.865 kb on - strandat 4387.865 kb on - strandat 4387.890 kb on - strand, within PS417_20195at 4387.930 kb on + strand, within PS417_20195at 4387.930 kb on + strand, within PS417_20195at 4387.930 kb on + strand, within PS417_20195at 4387.930 kb on + strand, within PS417_20195at 4387.931 kb on - strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.934 kb on + strand, within PS417_20195at 4387.935 kb on - strand, within PS417_20195at 4387.935 kb on - strand, within PS417_20195at 4387.935 kb on - strand, within PS417_20195at 4387.935 kb on - strand, within PS417_20195at 4387.935 kb on - strand, within PS417_20195at 4387.935 kb on - strand, within PS417_20195at 4387.935 kb on - strand, within PS417_20195at 4387.935 kb on - strand, within PS417_20195at 4388.063 kb on - strand, within PS417_20195at 4388.221 kb on + strand, within PS417_20195at 4388.222 kb on - strandat 4388.414 kb on - strand, within PS417_20195at 4388.414 kb on - strand, within PS417_20195at 4388.425 kb on + strand, within PS417_20195at 4388.425 kb on + strand, within PS417_20195at 4388.425 kb on + strand, within PS417_20195at 4388.425 kb on + strand, within PS417_20195at 4388.426 kb on - strand, within PS417_20195at 4388.426 kb on - strand, within PS417_20195at 4388.426 kb on - strand, within PS417_20195at 4388.426 kb on - strand, within PS417_20195at 4388.426 kb on - strand, within PS417_20195at 4388.500 kb on + strandat 4388.524 kb on + strand, within PS417_20195at 4388.524 kb on + strand, within PS417_20195at 4388.524 kb on + strand, within PS417_20195at 4388.525 kb on - strand, within PS417_20195at 4388.525 kb on - strand, within PS417_20195at 4388.525 kb on - strand, within PS417_20195

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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4,385,265 + PS417_20180 0.49 +0.0
4,385,265 + PS417_20180 0.49 +0.7
4,385,266 - PS417_20180 0.50 +0.3
4,385,266 - PS417_20180 0.50 -1.6
4,385,312 + PS417_20180 0.54 -0.0
4,385,372 - PS417_20180 0.61 +0.5
4,385,501 - PS417_20180 0.74 -2.4
4,385,501 - PS417_20180 0.74 +0.3
4,385,501 - PS417_20180 0.74 +0.1
4,385,856 + PS417_20185 0.26 -1.8
4,385,856 + PS417_20185 0.26 +0.1
4,385,857 - PS417_20185 0.26 +0.1
4,385,893 - PS417_20185 0.35 +0.7
4,386,194 + -0.1
4,386,194 + +0.3
4,386,197 + +1.3
4,386,198 - -1.3
4,386,209 + -0.4
4,386,209 + +0.3
4,386,209 + -0.7
4,386,210 - +0.6
4,386,216 - -0.8
4,386,227 - -0.4
4,386,267 - +0.7
4,386,314 + +0.3
4,386,401 - PS417_20190 0.14 -1.1
4,386,401 - PS417_20190 0.14 +4.3
4,386,903 + PS417_20190 0.47 -0.4
4,386,903 + PS417_20190 0.47 +0.3
4,386,903 + PS417_20190 0.47 +0.5
4,386,904 - PS417_20190 0.47 -0.0
4,386,928 + PS417_20190 0.49 -0.3
4,387,029 + PS417_20190 0.56 -0.4
4,387,047 + PS417_20190 0.57 -2.0
4,387,047 + PS417_20190 0.57 -0.5
4,387,047 + PS417_20190 0.57 +0.1
4,387,047 + PS417_20190 0.57 -0.7
4,387,047 + PS417_20190 0.57 -0.3
4,387,048 - PS417_20190 0.57 -1.9
4,387,048 - PS417_20190 0.57 +0.0
4,387,048 - PS417_20190 0.57 +2.3
4,387,048 - PS417_20190 0.57 -0.4
4,387,136 + PS417_20190 0.63 +0.1
4,387,137 - PS417_20190 0.63 +0.4
4,387,147 - PS417_20190 0.63 -2.1
4,387,365 + PS417_20190 0.78 -0.3
4,387,365 + PS417_20190 0.78 -0.7
4,387,366 - PS417_20190 0.78 +0.0
4,387,366 - PS417_20190 0.78 +0.4
4,387,549 + +1.6
4,387,549 + +0.1
4,387,550 - -1.4
4,387,550 - -0.3
4,387,550 - -0.4
4,387,550 - +0.7
4,387,587 + +0.1
4,387,587 + -0.2
4,387,587 + -0.1
4,387,587 + -0.4
4,387,748 + -1.8
4,387,758 - -1.2
4,387,793 - +1.9
4,387,828 + -0.0
4,387,829 - -1.3
4,387,829 - +0.6
4,387,829 - -2.2
4,387,864 + -0.2
4,387,864 + -0.7
4,387,864 + -0.4
4,387,864 + -0.6
4,387,864 + -1.5
4,387,864 + -0.3
4,387,864 + -0.3
4,387,865 - -0.5
4,387,865 - +0.8
4,387,865 - +1.7
4,387,865 - +0.3
4,387,890 - PS417_20195 0.11 +0.5
4,387,930 + PS417_20195 0.14 -0.3
4,387,930 + PS417_20195 0.14 -1.1
4,387,930 + PS417_20195 0.14 -1.3
4,387,930 + PS417_20195 0.14 -1.9
4,387,931 - PS417_20195 0.14 -0.4
4,387,934 + PS417_20195 0.14 -1.1
4,387,934 + PS417_20195 0.14 -0.7
4,387,934 + PS417_20195 0.14 -2.0
4,387,934 + PS417_20195 0.14 -0.8
4,387,934 + PS417_20195 0.14 -1.6
4,387,934 + PS417_20195 0.14 +0.3
4,387,934 + PS417_20195 0.14 -2.5
4,387,934 + PS417_20195 0.14 -0.8
4,387,934 + PS417_20195 0.14 -1.7
4,387,934 + PS417_20195 0.14 -0.8
4,387,934 + PS417_20195 0.14 +0.7
4,387,934 + PS417_20195 0.14 -0.2
4,387,935 - PS417_20195 0.14 -0.4
4,387,935 - PS417_20195 0.14 +0.3
4,387,935 - PS417_20195 0.14 +2.3
4,387,935 - PS417_20195 0.14 +0.2
4,387,935 - PS417_20195 0.14 -0.7
4,387,935 - PS417_20195 0.14 +1.9
4,387,935 - PS417_20195 0.14 -0.3
4,387,935 - PS417_20195 0.14 -0.3
4,388,063 - PS417_20195 0.24 -0.2
4,388,221 + PS417_20195 0.35 -1.5
4,388,222 - -0.3
4,388,414 - PS417_20195 0.49 -0.6
4,388,414 - PS417_20195 0.49 +0.3
4,388,425 + PS417_20195 0.50 +1.6
4,388,425 + PS417_20195 0.50 -1.1
4,388,425 + PS417_20195 0.50 -0.8
4,388,425 + PS417_20195 0.50 -0.7
4,388,426 - PS417_20195 0.50 +0.2
4,388,426 - PS417_20195 0.50 -2.2
4,388,426 - PS417_20195 0.50 +1.3
4,388,426 - PS417_20195 0.50 -0.5
4,388,426 - PS417_20195 0.50 -0.3
4,388,500 + +2.3
4,388,524 + PS417_20195 0.57 -0.5
4,388,524 + PS417_20195 0.57 -1.0
4,388,524 + PS417_20195 0.57 -0.8
4,388,525 - PS417_20195 0.57 -0.3
4,388,525 - PS417_20195 0.57 -0.7
4,388,525 - PS417_20195 0.57 +1.3

Or see this region's nucleotide sequence