Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01990 and PS417_01995 are separated by 98 nucleotides PS417_01995 and PS417_02000 overlap by 21 nucleotides PS417_02000 and PS417_02005 are separated by 32 nucleotides
PS417_01990: PS417_01990 - cell division protein, at 441,508 to 443,079
_01990
PS417_01995: PS417_01995 - hypothetical protein, at 443,178 to 443,453
_01995
PS417_02000: PS417_02000 - glutamate synthase, at 443,433 to 447,878
_02000
PS417_02005: PS417_02005 - glutamate synthase, at 447,911 to 449,329
_02005
Position (kb) 443
444
445
446
447
448 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 442.901 kb on - strand, within PS417_01990 at 442.951 kb on + strand at 443.149 kb on + strand at 443.149 kb on + strand at 443.149 kb on + strand at 443.236 kb on + strand, within PS417_01995 at 443.255 kb on + strand, within PS417_01995 at 443.317 kb on - strand, within PS417_01995 at 443.317 kb on - strand, within PS417_01995 at 443.520 kb on - strand at 443.686 kb on - strand at 443.916 kb on - strand, within PS417_02000 at 443.964 kb on + strand, within PS417_02000 at 443.997 kb on + strand, within PS417_02000 at 443.998 kb on - strand, within PS417_02000 at 443.998 kb on - strand, within PS417_02000 at 443.998 kb on - strand, within PS417_02000 at 443.999 kb on + strand, within PS417_02000 at 444.037 kb on - strand, within PS417_02000 at 444.105 kb on - strand, within PS417_02000 at 444.412 kb on - strand, within PS417_02000 at 444.577 kb on - strand, within PS417_02000 at 444.702 kb on + strand, within PS417_02000 at 444.777 kb on + strand, within PS417_02000 at 444.778 kb on - strand, within PS417_02000 at 444.778 kb on - strand, within PS417_02000 at 444.801 kb on + strand, within PS417_02000 at 444.802 kb on - strand, within PS417_02000 at 444.813 kb on + strand, within PS417_02000 at 444.814 kb on - strand, within PS417_02000 at 444.814 kb on - strand, within PS417_02000 at 444.814 kb on - strand, within PS417_02000 at 445.176 kb on + strand, within PS417_02000 at 445.515 kb on + strand, within PS417_02000 at 445.516 kb on - strand, within PS417_02000 at 445.803 kb on + strand, within PS417_02000 at 445.881 kb on + strand, within PS417_02000 at 445.882 kb on - strand, within PS417_02000 at 446.190 kb on + strand, within PS417_02000 at 446.190 kb on + strand, within PS417_02000 at 446.190 kb on + strand, within PS417_02000 at 446.352 kb on + strand, within PS417_02000 at 446.352 kb on + strand at 446.353 kb on - strand, within PS417_02000 at 446.353 kb on - strand, within PS417_02000 at 446.740 kb on - strand, within PS417_02000 at 446.853 kb on + strand, within PS417_02000 at 447.141 kb on - strand, within PS417_02000 at 447.297 kb on + strand, within PS417_02000 at 447.298 kb on - strand, within PS417_02000 at 447.298 kb on - strand, within PS417_02000 at 447.381 kb on + strand, within PS417_02000 at 447.423 kb on + strand, within PS417_02000 at 447.537 kb on + strand at 447.615 kb on + strand at 447.616 kb on - strand at 447.739 kb on - strand at 447.796 kb on - strand at 447.796 kb on - strand at 447.908 kb on - strand at 447.908 kb on - strand at 447.929 kb on - strand at 448.013 kb on + strand at 448.014 kb on - strand at 448.014 kb on - strand at 448.014 kb on - strand at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.293 kb on - strand, within PS417_02005 at 448.512 kb on + strand, within PS417_02005 at 448.614 kb on - strand, within PS417_02005 at 448.614 kb on - strand, within PS417_02005 at 448.643 kb on + strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.649 kb on + strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.691 kb on + strand, within PS417_02005 at 448.692 kb on - strand, within PS417_02005
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 442,901 - PS417_01990 0.89 -1.0 442,951 + +0.2 443,149 + +2.3 443,149 + -0.1 443,149 + -0.4 443,236 + PS417_01995 0.21 +0.1 443,255 + PS417_01995 0.28 +0.1 443,317 - PS417_01995 0.50 +1.3 443,317 - PS417_01995 0.50 -2.0 443,520 - -1.1 443,686 - -1.9 443,916 - PS417_02000 0.11 -0.4 443,964 + PS417_02000 0.12 -0.3 443,997 + PS417_02000 0.13 +0.3 443,998 - PS417_02000 0.13 -2.5 443,998 - PS417_02000 0.13 -0.8 443,998 - PS417_02000 0.13 -0.7 443,999 + PS417_02000 0.13 -0.1 444,037 - PS417_02000 0.14 +1.7 444,105 - PS417_02000 0.15 -1.9 444,412 - PS417_02000 0.22 -4.7 444,577 - PS417_02000 0.26 +0.7 444,702 + PS417_02000 0.29 +2.3 444,777 + PS417_02000 0.30 -2.8 444,778 - PS417_02000 0.30 -3.4 444,778 - PS417_02000 0.30 -1.8 444,801 + PS417_02000 0.31 -0.3 444,802 - PS417_02000 0.31 -0.3 444,813 + PS417_02000 0.31 +0.6 444,814 - PS417_02000 0.31 +0.1 444,814 - PS417_02000 0.31 -0.7 444,814 - PS417_02000 0.31 -0.3 445,176 + PS417_02000 0.39 +0.0 445,515 + PS417_02000 0.47 +0.7 445,516 - PS417_02000 0.47 -1.1 445,803 + PS417_02000 0.53 -2.9 445,881 + PS417_02000 0.55 +0.7 445,882 - PS417_02000 0.55 +0.3 446,190 + PS417_02000 0.62 -2.7 446,190 + PS417_02000 0.62 -0.3 446,190 + PS417_02000 0.62 +0.3 446,352 + PS417_02000 0.66 -1.0 446,352 + +2.3 446,353 - PS417_02000 0.66 -0.8 446,353 - PS417_02000 0.66 -1.1 446,740 - PS417_02000 0.74 -0.3 446,853 + PS417_02000 0.77 -3.1 447,141 - PS417_02000 0.83 -2.3 447,297 + PS417_02000 0.87 -1.7 447,298 - PS417_02000 0.87 -0.5 447,298 - PS417_02000 0.87 -1.7 447,381 + PS417_02000 0.89 -1.0 447,423 + PS417_02000 0.90 -2.1 447,537 + +0.2 447,615 + +1.3 447,616 - -1.0 447,739 - +0.8 447,796 - +0.3 447,796 - +1.0 447,908 - -3.7 447,908 - -3.2 447,929 - +0.0 448,013 + -0.2 448,014 - -2.5 448,014 - -1.0 448,014 - -1.8 448,292 + PS417_02005 0.27 -3.2 448,292 + PS417_02005 0.27 -2.7 448,292 + PS417_02005 0.27 -3.7 448,292 + PS417_02005 0.27 -0.4 448,292 + PS417_02005 0.27 +0.2 448,292 + PS417_02005 0.27 -0.6 448,292 + PS417_02005 0.27 -1.0 448,293 - PS417_02005 0.27 +0.3 448,512 + PS417_02005 0.42 -0.7 448,614 - PS417_02005 0.50 -2.8 448,614 - PS417_02005 0.50 -1.4 448,643 + PS417_02005 0.52 -1.9 448,644 - PS417_02005 0.52 -2.8 448,644 - PS417_02005 0.52 -1.9 448,644 - PS417_02005 0.52 +1.1 448,644 - PS417_02005 0.52 -1.5 448,649 + PS417_02005 0.52 -2.0 448,650 - PS417_02005 0.52 -2.1 448,650 - PS417_02005 0.52 -1.1 448,691 + PS417_02005 0.55 -1.9 448,692 - PS417_02005 0.55 -1.8
Or see this region's nucleotide sequence