Strain Fitness in Pseudomonas simiae WCS417 around PS417_18100

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18090 and PS417_18095 are separated by 4 nucleotidesPS417_18095 and PS417_18100 overlap by 4 nucleotidesPS417_18100 and PS417_18105 are separated by 2 nucleotides PS417_18090: PS417_18090 - iron ABC transporter, at 3,940,139 to 3,940,930 _18090 PS417_18095: PS417_18095 - iron-dicitrate transporter subunit FecD, at 3,940,935 to 3,941,903 _18095 PS417_18100: PS417_18100 - iron ABC transporter, at 3,941,900 to 3,942,889 _18100 PS417_18105: PS417_18105 - iron-dicitrate transporter substrate-binding subunit, at 3,942,892 to 3,943,812 _18105 Position (kb) 3941 3942 3943Strain fitness (log2 ratio) -1 0 1 2at 3941.095 kb on + strand, within PS417_18095at 3941.096 kb on - strand, within PS417_18095at 3941.582 kb on + strand, within PS417_18095at 3941.604 kb on + strand, within PS417_18095at 3941.605 kb on - strand, within PS417_18095at 3941.880 kb on + strandat 3941.881 kb on - strandat 3942.646 kb on + strand, within PS417_18100at 3942.646 kb on + strand, within PS417_18100at 3942.739 kb on - strand, within PS417_18100at 3942.739 kb on - strand, within PS417_18100at 3942.739 kb on - strand, within PS417_18100at 3942.739 kb on - strand, within PS417_18100at 3942.746 kb on - strand, within PS417_18100at 3942.823 kb on - strandat 3942.905 kb on - strandat 3943.215 kb on - strand, within PS417_18105at 3943.457 kb on + strand, within PS417_18105at 3943.871 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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3,941,095 + PS417_18095 0.17 -0.1
3,941,096 - PS417_18095 0.17 +1.4
3,941,582 + PS417_18095 0.67 -0.2
3,941,604 + PS417_18095 0.69 -0.5
3,941,605 - PS417_18095 0.69 +1.3
3,941,880 + -1.2
3,941,881 - -0.2
3,942,646 + PS417_18100 0.75 +0.1
3,942,646 + PS417_18100 0.75 +1.2
3,942,739 - PS417_18100 0.85 +2.3
3,942,739 - PS417_18100 0.85 +2.3
3,942,739 - PS417_18100 0.85 -0.4
3,942,739 - PS417_18100 0.85 -0.3
3,942,746 - PS417_18100 0.85 +0.4
3,942,823 - -0.7
3,942,905 - +0.2
3,943,215 - PS417_18105 0.35 -0.3
3,943,457 + PS417_18105 0.61 +1.7
3,943,871 + -1.1

Or see this region's nucleotide sequence