Strain Fitness in Pseudomonas simiae WCS417 around PS417_17690
Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2'-Deoxyinosine 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
3,860,285 | + | PS417_17685 | 0.36 | -0.5 | |
3,861,197 | + | -0.0 | |||
3,861,507 | - | PS417_17690 | 0.30 | +0.1 | |
3,861,684 | - | PS417_17690 | 0.42 | +0.7 | |
3,862,100 | - | PS417_17690 | 0.72 | +0.7 | |
3,862,200 | - | PS417_17690 | 0.79 | -0.3 | |
3,862,206 | + | PS417_17690 | 0.80 | -0.1 | |
3,862,207 | - | PS417_17690 | 0.80 | -0.9 | |
3,862,207 | - | PS417_17690 | 0.80 | -0.4 | |
3,862,207 | - | PS417_17690 | 0.80 | +0.4 | |
3,862,389 | + | +0.1 | |||
3,862,389 | + | -0.4 | |||
3,862,390 | - | -1.0 | |||
3,862,496 | - | -0.1 | |||
3,862,526 | + | +0.1 | |||
3,862,527 | - | +0.7 | |||
3,862,790 | - | +0.1 | |||
3,862,971 | + | +0.2 | |||
3,863,187 | + | +2.3 | |||
3,863,240 | - | +1.0 | |||
3,863,240 | - | -3.0 | |||
3,863,469 | - | PS417_17700 | 0.23 | +0.6 | |
3,863,469 | - | PS417_17700 | 0.23 | -0.3 | |
3,863,469 | - | -0.7 |
Or see this region's nucleotide sequence