Strain Fitness in Pseudomonas simiae WCS417 around PS417_17545

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17535 and PS417_17540 overlap by 4 nucleotidesPS417_17540 and PS417_17545 are separated by 195 nucleotidesPS417_17545 and PS417_17550 are separated by 1 nucleotides PS417_17535: PS417_17535 - beta-lactamase, at 3,829,702 to 3,830,565 _17535 PS417_17540: PS417_17540 - ArsR family transcriptional regulator, at 3,830,562 to 3,831,047 _17540 PS417_17545: PS417_17545 - 2-oxoisovalerate dehydrogenase, at 3,831,243 to 3,832,478 _17545 PS417_17550: PS417_17550 - branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data), at 3,832,480 to 3,833,538 _17550 Position (kb) 3831 3832 3833Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3830.257 kb on + strand, within PS417_17535at 3830.305 kb on + strand, within PS417_17535at 3830.305 kb on + strand, within PS417_17535at 3830.305 kb on + strand, within PS417_17535at 3830.383 kb on - strand, within PS417_17535at 3830.506 kb on - strandat 3830.577 kb on - strandat 3830.608 kb on + strandat 3831.227 kb on + strandat 3831.227 kb on + strandat 3831.234 kb on + strandat 3831.561 kb on + strand, within PS417_17545at 3831.643 kb on - strand, within PS417_17545at 3831.754 kb on - strand, within PS417_17545at 3831.812 kb on - strand, within PS417_17545at 3831.934 kb on + strand, within PS417_17545at 3832.206 kb on + strand, within PS417_17545at 3832.780 kb on + strand, within PS417_17550at 3832.780 kb on + strand, within PS417_17550at 3832.895 kb on - strand, within PS417_17550at 3833.137 kb on + strandat 3833.138 kb on - strand, within PS417_17550at 3833.215 kb on + strand, within PS417_17550at 3833.215 kb on + strandat 3833.215 kb on + strand, within PS417_17550

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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3,830,257 + PS417_17535 0.64 -0.3
3,830,305 + PS417_17535 0.70 +3.3
3,830,305 + PS417_17535 0.70 -0.7
3,830,305 + PS417_17535 0.70 +0.5
3,830,383 - PS417_17535 0.79 +0.7
3,830,506 - +0.9
3,830,577 - -0.4
3,830,608 + -1.4
3,831,227 + -0.6
3,831,227 + +1.0
3,831,234 + -0.9
3,831,561 + PS417_17545 0.26 -2.2
3,831,643 - PS417_17545 0.32 +0.7
3,831,754 - PS417_17545 0.41 +0.5
3,831,812 - PS417_17545 0.46 +3.1
3,831,934 + PS417_17545 0.56 +2.2
3,832,206 + PS417_17545 0.78 -0.1
3,832,780 + PS417_17550 0.28 +1.1
3,832,780 + PS417_17550 0.28 -0.6
3,832,895 - PS417_17550 0.39 -2.1
3,833,137 + +2.3
3,833,138 - PS417_17550 0.62 -1.6
3,833,215 + PS417_17550 0.69 +0.0
3,833,215 + -0.3
3,833,215 + PS417_17550 0.69 +2.1

Or see this region's nucleotide sequence