Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17535 and PS417_17540 overlap by 4 nucleotides PS417_17540 and PS417_17545 are separated by 195 nucleotides PS417_17545 and PS417_17550 are separated by 1 nucleotides
PS417_17535: PS417_17535 - beta-lactamase, at 3,829,702 to 3,830,565
_17535
PS417_17540: PS417_17540 - ArsR family transcriptional regulator, at 3,830,562 to 3,831,047
_17540
PS417_17545: PS417_17545 - 2-oxoisovalerate dehydrogenase, at 3,831,243 to 3,832,478
_17545
PS417_17550: PS417_17550 - branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) , at 3,832,480 to 3,833,538
_17550
Position (kb)
3831
3832
3833 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3830.257 kb on + strand, within PS417_17535 at 3830.305 kb on + strand, within PS417_17535 at 3830.305 kb on + strand, within PS417_17535 at 3830.305 kb on + strand, within PS417_17535 at 3830.383 kb on - strand, within PS417_17535 at 3830.506 kb on - strand at 3830.577 kb on - strand at 3830.608 kb on + strand at 3831.227 kb on + strand at 3831.227 kb on + strand at 3831.234 kb on + strand at 3831.561 kb on + strand, within PS417_17545 at 3831.643 kb on - strand, within PS417_17545 at 3831.754 kb on - strand, within PS417_17545 at 3831.812 kb on - strand, within PS417_17545 at 3831.934 kb on + strand, within PS417_17545 at 3832.206 kb on + strand, within PS417_17545 at 3832.780 kb on + strand, within PS417_17550 at 3832.780 kb on + strand, within PS417_17550 at 3832.895 kb on - strand, within PS417_17550 at 3833.137 kb on + strand at 3833.138 kb on - strand, within PS417_17550 at 3833.215 kb on + strand, within PS417_17550 at 3833.215 kb on + strand at 3833.215 kb on + strand, within PS417_17550
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 3,830,257 + PS417_17535 0.64 -0.3 3,830,305 + PS417_17535 0.70 +3.3 3,830,305 + PS417_17535 0.70 -0.7 3,830,305 + PS417_17535 0.70 +0.5 3,830,383 - PS417_17535 0.79 +0.7 3,830,506 - +0.9 3,830,577 - -0.4 3,830,608 + -1.4 3,831,227 + -0.6 3,831,227 + +1.0 3,831,234 + -0.9 3,831,561 + PS417_17545 0.26 -2.2 3,831,643 - PS417_17545 0.32 +0.7 3,831,754 - PS417_17545 0.41 +0.5 3,831,812 - PS417_17545 0.46 +3.1 3,831,934 + PS417_17545 0.56 +2.2 3,832,206 + PS417_17545 0.78 -0.1 3,832,780 + PS417_17550 0.28 +1.1 3,832,780 + PS417_17550 0.28 -0.6 3,832,895 - PS417_17550 0.39 -2.1 3,833,137 + +2.3 3,833,138 - PS417_17550 0.62 -1.6 3,833,215 + PS417_17550 0.69 +0.0 3,833,215 + -0.3 3,833,215 + PS417_17550 0.69 +2.1
Or see this region's nucleotide sequence