Strain Fitness in Pseudomonas simiae WCS417 around PS417_01655

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01645 and PS417_01650 are separated by 77 nucleotidesPS417_01650 and PS417_01655 are separated by 150 nucleotidesPS417_01655 and PS417_01660 are separated by 334 nucleotides PS417_01645: PS417_01645 - cupin, at 360,975 to 361,400 _01645 PS417_01650: PS417_01650 - chorismate mutase, at 361,478 to 362,014 _01650 PS417_01655: PS417_01655 - glutamine synthetase, at 362,165 to 363,571 _01655 PS417_01660: PS417_01660 - tRNA s(4)U8 sulfurtransferase, at 363,906 to 365,360 _01660 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1 2at 361.224 kb on + strand, within PS417_01645at 361.290 kb on - strand, within PS417_01645at 361.483 kb on + strandat 361.483 kb on + strandat 361.484 kb on - strandat 361.606 kb on + strand, within PS417_01650at 361.662 kb on - strand, within PS417_01650at 361.734 kb on + strand, within PS417_01650at 361.734 kb on + strand, within PS417_01650at 361.734 kb on + strand, within PS417_01650at 361.735 kb on - strand, within PS417_01650at 361.803 kb on + strand, within PS417_01650at 361.803 kb on + strand, within PS417_01650at 361.804 kb on - strand, within PS417_01650at 361.804 kb on - strand, within PS417_01650at 362.068 kb on + strandat 362.068 kb on + strandat 362.069 kb on - strandat 362.069 kb on - strandat 362.069 kb on - strandat 362.069 kb on - strandat 362.143 kb on + strandat 362.143 kb on + strandat 362.143 kb on + strandat 362.149 kb on - strandat 363.644 kb on - strandat 363.727 kb on + strandat 363.727 kb on + strandat 363.729 kb on + strandat 363.740 kb on + strandat 363.774 kb on + strandat 363.774 kb on + strandat 363.799 kb on + strandat 363.826 kb on + strandat 363.826 kb on + strandat 363.826 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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361,224 + PS417_01645 0.58 +0.0
361,290 - PS417_01645 0.74 -0.1
361,483 + -1.0
361,483 + +0.4
361,484 - +0.6
361,606 + PS417_01650 0.24 -0.8
361,662 - PS417_01650 0.34 -1.6
361,734 + PS417_01650 0.48 +1.0
361,734 + PS417_01650 0.48 -0.7
361,734 + PS417_01650 0.48 +0.8
361,735 - PS417_01650 0.48 -0.1
361,803 + PS417_01650 0.61 -0.9
361,803 + PS417_01650 0.61 +0.2
361,804 - PS417_01650 0.61 +0.0
361,804 - PS417_01650 0.61 +0.5
362,068 + -0.7
362,068 + +0.2
362,069 - -0.8
362,069 - +0.0
362,069 - +0.0
362,069 - -0.0
362,143 + +0.3
362,143 + -0.1
362,143 + -1.0
362,149 - +0.4
363,644 - +1.4
363,727 + +0.2
363,727 + +2.4
363,729 + -0.7
363,740 + -1.0
363,774 + +0.4
363,774 + -0.7
363,799 + +1.4
363,826 + +1.6
363,826 + -2.5
363,826 + +0.4
363,829 + +2.4
363,829 + +1.8
363,829 + -0.5
363,829 + -0.2
363,829 + -0.1
363,829 + +0.5

Or see this region's nucleotide sequence