Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01625 and PS417_01630 overlap by 2 nucleotides PS417_01630 and PS417_01635 are separated by 532 nucleotides PS417_01635 and PS417_01640 overlap by 4 nucleotides
PS417_01625: PS417_01625 - rRNA methylase, at 356,742 to 357,197
_01625
PS417_01630: PS417_01630 - hypothetical protein, at 357,196 to 357,636
_01630
PS417_01635: PS417_01635 - nitrogen regulation protein NR(I), at 358,169 to 359,605
_01635
PS417_01640: PS417_01640 - histidine kinase, at 359,602 to 360,687
_01640
Position (kb) 358
359
360 Strain fitness (log2 ratio) -1
0
1
2
3 at 357.261 kb on + strand, within PS417_01630 at 357.262 kb on - strand, within PS417_01630 at 357.818 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 358.085 kb on + strand at 358.085 kb on + strand at 358.112 kb on + strand at 358.113 kb on - strand at 358.114 kb on + strand at 358.114 kb on + strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.244 kb on - strand at 358.563 kb on + strand, within PS417_01635 at 358.563 kb on + strand, within PS417_01635 at 358.781 kb on + strand, within PS417_01635 at 358.781 kb on + strand, within PS417_01635 at 358.782 kb on - strand, within PS417_01635 at 359.302 kb on - strand, within PS417_01635 at 359.486 kb on + strand at 359.486 kb on + strand at 359.486 kb on + strand at 359.487 kb on - strand at 359.561 kb on - strand at 359.938 kb on - strand, within PS417_01640 at 359.938 kb on - strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.942 kb on - strand, within PS417_01640 at 359.942 kb on - strand, within PS417_01640 at 360.408 kb on - strand, within PS417_01640 at 360.599 kb on + strand at 360.599 kb on + strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 357,261 + PS417_01630 0.15 +0.1 357,262 - PS417_01630 0.15 +0.8 357,818 - +0.5 357,843 - -1.0 357,843 - -0.4 357,843 - -0.0 357,843 - -1.3 357,843 - +3.4 357,843 - -1.1 358,085 + +0.4 358,085 + -0.2 358,112 + +0.3 358,113 - +1.4 358,114 + +1.0 358,114 + -0.1 358,115 - -0.7 358,115 - +0.0 358,115 - +0.8 358,244 - -0.6 358,563 + PS417_01635 0.27 -0.4 358,563 + PS417_01635 0.27 -1.1 358,781 + PS417_01635 0.43 +0.1 358,781 + PS417_01635 0.43 +1.6 358,782 - PS417_01635 0.43 +0.6 359,302 - PS417_01635 0.79 -0.4 359,486 + +3.0 359,486 + +0.2 359,486 + +0.4 359,487 - -0.7 359,561 - +0.3 359,938 - PS417_01640 0.31 +0.3 359,938 - PS417_01640 0.31 -1.5 359,941 + PS417_01640 0.31 -0.2 359,941 + PS417_01640 0.31 +0.4 359,941 + PS417_01640 0.31 +0.4 359,942 - PS417_01640 0.31 +3.4 359,942 - PS417_01640 0.31 -0.7 360,408 - PS417_01640 0.74 +0.8 360,599 + -1.3 360,599 + +0.5 360,600 - -1.0 360,600 - +0.7 360,600 - +0.0
Or see this region's nucleotide sequence