Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15840 and PS417_15845 overlap by 59 nucleotides PS417_15845 and PS417_15850 are separated by 76 nucleotides
PS417_15840: PS417_15840 - histidine kinase, at 3,468,986 to 3,469,945
_15840
PS417_15845: PS417_15845 - membrane protein, at 3,469,887 to 3,471,125
_15845
PS417_15850: PS417_15850 - alcohol dehydrogenase, at 3,471,202 to 3,472,275
_15850
Position (kb)
3469
3470
3471
3472 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3468.912 kb on - strand at 3468.943 kb on + strand at 3468.943 kb on + strand at 3468.943 kb on + strand at 3468.980 kb on + strand at 3468.981 kb on - strand at 3469.172 kb on - strand, within PS417_15840 at 3469.179 kb on - strand, within PS417_15840 at 3469.202 kb on - strand, within PS417_15840 at 3469.202 kb on - strand, within PS417_15840 at 3469.745 kb on - strand, within PS417_15840 at 3469.745 kb on - strand, within PS417_15840 at 3469.747 kb on - strand, within PS417_15840 at 3469.823 kb on + strand, within PS417_15840 at 3469.823 kb on + strand, within PS417_15840 at 3469.824 kb on - strand, within PS417_15840 at 3469.875 kb on + strand at 3469.944 kb on - strand at 3469.949 kb on - strand at 3469.949 kb on - strand at 3469.949 kb on - strand at 3469.949 kb on - strand at 3469.949 kb on - strand at 3470.299 kb on + strand, within PS417_15845 at 3470.299 kb on + strand, within PS417_15845 at 3470.299 kb on + strand, within PS417_15845 at 3470.299 kb on + strand, within PS417_15845 at 3470.300 kb on - strand, within PS417_15845 at 3470.300 kb on - strand, within PS417_15845 at 3470.301 kb on + strand at 3470.302 kb on - strand, within PS417_15845 at 3470.302 kb on - strand, within PS417_15845 at 3470.309 kb on + strand, within PS417_15845 at 3470.340 kb on + strand, within PS417_15845 at 3470.552 kb on + strand, within PS417_15845 at 3470.636 kb on - strand, within PS417_15845 at 3470.648 kb on - strand, within PS417_15845 at 3470.792 kb on + strand, within PS417_15845 at 3470.899 kb on + strand, within PS417_15845 at 3471.257 kb on + strand at 3471.258 kb on - strand at 3471.392 kb on + strand, within PS417_15850 at 3471.507 kb on + strand, within PS417_15850 at 3471.508 kb on - strand, within PS417_15850 at 3471.684 kb on + strand, within PS417_15850 at 3471.881 kb on + strand at 3471.882 kb on - strand, within PS417_15850 at 3471.882 kb on - strand at 3471.907 kb on - strand, within PS417_15850 at 3471.907 kb on - strand, within PS417_15850 at 3471.993 kb on - strand, within PS417_15850
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 3,468,912 - +0.0 3,468,943 + -0.9 3,468,943 + -1.1 3,468,943 + -1.0 3,468,980 + -0.9 3,468,981 - -0.4 3,469,172 - PS417_15840 0.19 -0.2 3,469,179 - PS417_15840 0.20 +0.7 3,469,202 - PS417_15840 0.23 -1.6 3,469,202 - PS417_15840 0.23 -1.4 3,469,745 - PS417_15840 0.79 +0.6 3,469,745 - PS417_15840 0.79 -0.6 3,469,747 - PS417_15840 0.79 -0.7 3,469,823 + PS417_15840 0.87 -1.7 3,469,823 + PS417_15840 0.87 -0.7 3,469,824 - PS417_15840 0.87 +2.3 3,469,875 + -0.6 3,469,944 - -0.6 3,469,949 - +1.0 3,469,949 - +0.2 3,469,949 - -2.9 3,469,949 - -0.2 3,469,949 - -2.7 3,470,299 + PS417_15845 0.33 -1.0 3,470,299 + PS417_15845 0.33 -1.8 3,470,299 + PS417_15845 0.33 -0.0 3,470,299 + PS417_15845 0.33 -0.4 3,470,300 - PS417_15845 0.33 +0.1 3,470,300 - PS417_15845 0.33 +0.3 3,470,301 + -0.7 3,470,302 - PS417_15845 0.33 -1.3 3,470,302 - PS417_15845 0.33 -0.3 3,470,309 + PS417_15845 0.34 -2.3 3,470,340 + PS417_15845 0.37 -0.9 3,470,552 + PS417_15845 0.54 +0.5 3,470,636 - PS417_15845 0.60 -1.6 3,470,648 - PS417_15845 0.61 +1.5 3,470,792 + PS417_15845 0.73 +0.0 3,470,899 + PS417_15845 0.82 +0.7 3,471,257 + -1.7 3,471,258 - +2.3 3,471,392 + PS417_15850 0.18 -1.0 3,471,507 + PS417_15850 0.28 -0.2 3,471,508 - PS417_15850 0.28 -0.5 3,471,684 + PS417_15850 0.45 -0.9 3,471,881 + +2.3 3,471,882 - PS417_15850 0.63 +0.4 3,471,882 - +1.3 3,471,907 - PS417_15850 0.66 -0.6 3,471,907 - PS417_15850 0.66 +1.0 3,471,993 - PS417_15850 0.74 +0.3
Or see this region's nucleotide sequence