Strain Fitness in Pseudomonas simiae WCS417 around PS417_14710
Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2'-Deoxyinosine 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
3,211,250 | + | PS417_14700 | 0.59 | +3.3 | |
3,211,698 | + | +0.0 | |||
3,211,698 | + | -1.7 | |||
3,211,698 | + | +1.3 | |||
3,211,699 | - | -0.7 | |||
3,211,776 | + | -0.8 | |||
3,211,776 | + | -0.3 | |||
3,211,776 | + | -0.7 | |||
3,211,999 | - | -0.9 | |||
3,212,024 | - | +0.7 | |||
3,212,112 | + | -1.1 | |||
3,212,112 | + | +0.3 | |||
3,212,596 | - | PS417_14710 | 0.81 | -1.3 | |
3,212,660 | + | -1.3 | |||
3,212,673 | + | +2.1 | |||
3,212,689 | - | +0.2 | |||
3,212,762 | - | +0.5 | |||
3,212,809 | + | -0.1 | |||
3,212,810 | - | -0.4 | |||
3,212,854 | + | +1.0 | |||
3,212,855 | - | +0.6 | |||
3,212,855 | - | -0.3 | |||
3,212,855 | - | -3.1 | |||
3,212,855 | - | -1.8 | |||
3,212,910 | - | PS417_14715 | 0.11 | -0.0 | |
3,212,910 | - | PS417_14715 | 0.11 | +1.3 | |
3,213,229 | + | PS417_14715 | 0.33 | -1.7 | |
3,213,229 | + | PS417_14715 | 0.33 | -0.5 | |
3,213,292 | + | PS417_14715 | 0.37 | -0.7 | |
3,213,312 | - | PS417_14715 | 0.39 | -0.5 | |
3,213,416 | - | PS417_14715 | 0.45 | -1.7 | |
3,213,416 | - | PS417_14715 | 0.45 | -0.3 | |
3,213,441 | + | PS417_14715 | 0.47 | +0.0 | |
3,213,571 | - | PS417_14715 | 0.56 | -0.9 | |
3,213,639 | + | PS417_14715 | 0.60 | -1.3 |
Or see this region's nucleotide sequence