Strain Fitness in Pseudomonas simiae WCS417 around PS417_14105

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14090 and PS417_14100 are separated by 194 nucleotidesPS417_14100 and PS417_14105 are separated by 77 nucleotidesPS417_14105 and PS417_14110 are separated by 189 nucleotides PS417_14090: PS417_14090 - hypothetical protein, at 3,093,070 to 3,093,372 _14090 PS417_14100: PS417_14100 - alpha-ketoglutarate-dependent dioxygenase, at 3,093,567 to 3,094,232 _14100 PS417_14105: PS417_14105 - 6-O-methylguanine DNA methyltransferase, at 3,094,310 to 3,095,362 _14105 PS417_14110: PS417_14110 - 2-nitropropane dioxygenase, at 3,095,552 to 3,096,613 _14110 Position (kb) 3094 3095 3096Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3093.413 kb on + strandat 3093.414 kb on - strandat 3093.417 kb on + strandat 3093.417 kb on + strandat 3093.652 kb on + strand, within PS417_14100at 3093.652 kb on + strand, within PS417_14100at 3093.653 kb on - strand, within PS417_14100at 3093.655 kb on + strand, within PS417_14100at 3093.756 kb on - strand, within PS417_14100at 3093.955 kb on - strandat 3094.008 kb on - strand, within PS417_14100at 3094.022 kb on - strand, within PS417_14100at 3094.022 kb on - strand, within PS417_14100at 3094.390 kb on - strandat 3094.390 kb on - strandat 3094.763 kb on + strand, within PS417_14105at 3094.764 kb on - strand, within PS417_14105at 3094.822 kb on + strand, within PS417_14105at 3095.274 kb on + strandat 3095.403 kb on + strandat 3095.478 kb on + strandat 3095.478 kb on + strandat 3095.636 kb on - strandat 3095.636 kb on - strandat 3095.662 kb on + strand, within PS417_14110at 3095.663 kb on - strandat 3095.841 kb on - strand, within PS417_14110at 3095.994 kb on + strandat 3095.994 kb on + strand, within PS417_14110at 3096.285 kb on - strand, within PS417_14110at 3096.292 kb on + strand, within PS417_14110

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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3,093,413 + -1.4
3,093,414 - +0.7
3,093,417 + +0.3
3,093,417 + +0.3
3,093,652 + PS417_14100 0.13 -1.7
3,093,652 + PS417_14100 0.13 +0.7
3,093,653 - PS417_14100 0.13 +1.0
3,093,655 + PS417_14100 0.13 -0.3
3,093,756 - PS417_14100 0.28 -1.1
3,093,955 - +3.3
3,094,008 - PS417_14100 0.66 +0.0
3,094,022 - PS417_14100 0.68 +0.1
3,094,022 - PS417_14100 0.68 -0.2
3,094,390 - -0.1
3,094,390 - +0.6
3,094,763 + PS417_14105 0.43 -1.4
3,094,764 - PS417_14105 0.43 -1.4
3,094,822 + PS417_14105 0.49 -1.9
3,095,274 + -1.2
3,095,403 + -0.7
3,095,478 + -0.7
3,095,478 + -0.2
3,095,636 - +0.8
3,095,636 - -1.0
3,095,662 + PS417_14110 0.10 +1.2
3,095,663 - -0.8
3,095,841 - PS417_14110 0.27 +0.4
3,095,994 + +1.3
3,095,994 + PS417_14110 0.42 -0.8
3,096,285 - PS417_14110 0.69 +1.2
3,096,292 + PS417_14110 0.70 -0.5

Or see this region's nucleotide sequence