Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14090 and PS417_14100 are separated by 194 nucleotides PS417_14100 and PS417_14105 are separated by 77 nucleotides PS417_14105 and PS417_14110 are separated by 189 nucleotides
PS417_14090: PS417_14090 - hypothetical protein, at 3,093,070 to 3,093,372
_14090
PS417_14100: PS417_14100 - alpha-ketoglutarate-dependent dioxygenase, at 3,093,567 to 3,094,232
_14100
PS417_14105: PS417_14105 - 6-O-methylguanine DNA methyltransferase, at 3,094,310 to 3,095,362
_14105
PS417_14110: PS417_14110 - 2-nitropropane dioxygenase, at 3,095,552 to 3,096,613
_14110
Position (kb)
3094
3095
3096 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3093.413 kb on + strand at 3093.414 kb on - strand at 3093.417 kb on + strand at 3093.417 kb on + strand at 3093.652 kb on + strand, within PS417_14100 at 3093.652 kb on + strand, within PS417_14100 at 3093.653 kb on - strand, within PS417_14100 at 3093.655 kb on + strand, within PS417_14100 at 3093.756 kb on - strand, within PS417_14100 at 3093.955 kb on - strand at 3094.008 kb on - strand, within PS417_14100 at 3094.022 kb on - strand, within PS417_14100 at 3094.022 kb on - strand, within PS417_14100 at 3094.390 kb on - strand at 3094.390 kb on - strand at 3094.763 kb on + strand, within PS417_14105 at 3094.764 kb on - strand, within PS417_14105 at 3094.822 kb on + strand, within PS417_14105 at 3095.274 kb on + strand at 3095.403 kb on + strand at 3095.478 kb on + strand at 3095.478 kb on + strand at 3095.636 kb on - strand at 3095.636 kb on - strand at 3095.662 kb on + strand, within PS417_14110 at 3095.663 kb on - strand at 3095.841 kb on - strand, within PS417_14110 at 3095.994 kb on + strand at 3095.994 kb on + strand, within PS417_14110 at 3096.285 kb on - strand, within PS417_14110 at 3096.292 kb on + strand, within PS417_14110
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 3,093,413 + -1.4 3,093,414 - +0.7 3,093,417 + +0.3 3,093,417 + +0.3 3,093,652 + PS417_14100 0.13 -1.7 3,093,652 + PS417_14100 0.13 +0.7 3,093,653 - PS417_14100 0.13 +1.0 3,093,655 + PS417_14100 0.13 -0.3 3,093,756 - PS417_14100 0.28 -1.1 3,093,955 - +3.3 3,094,008 - PS417_14100 0.66 +0.0 3,094,022 - PS417_14100 0.68 +0.1 3,094,022 - PS417_14100 0.68 -0.2 3,094,390 - -0.1 3,094,390 - +0.6 3,094,763 + PS417_14105 0.43 -1.4 3,094,764 - PS417_14105 0.43 -1.4 3,094,822 + PS417_14105 0.49 -1.9 3,095,274 + -1.2 3,095,403 + -0.7 3,095,478 + -0.7 3,095,478 + -0.2 3,095,636 - +0.8 3,095,636 - -1.0 3,095,662 + PS417_14110 0.10 +1.2 3,095,663 - -0.8 3,095,841 - PS417_14110 0.27 +0.4 3,095,994 + +1.3 3,095,994 + PS417_14110 0.42 -0.8 3,096,285 - PS417_14110 0.69 +1.2 3,096,292 + PS417_14110 0.70 -0.5
Or see this region's nucleotide sequence