Strain Fitness in Pseudomonas simiae WCS417 around PS417_13970
Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2'-Deoxyinosine 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
3,068,021 | + | PS417_13965 | 0.22 | +2.3 | |
3,068,021 | + | PS417_13965 | 0.22 | +0.6 | |
3,068,022 | - | PS417_13965 | 0.22 | +0.3 | |
3,068,723 | + | PS417_13965 | 0.85 | -0.6 | |
3,068,723 | + | PS417_13965 | 0.85 | +0.7 | |
3,068,728 | - | PS417_13965 | 0.86 | -0.2 | |
3,068,920 | + | +1.7 | |||
3,069,026 | + | PS417_13970 | 0.12 | -0.8 | |
3,069,026 | + | PS417_13970 | 0.12 | +0.1 | |
3,069,026 | + | PS417_13970 | 0.12 | -0.5 | |
3,069,026 | + | PS417_13970 | 0.12 | +0.7 | |
3,069,026 | + | PS417_13970 | 0.12 | -0.3 | |
3,069,026 | + | PS417_13970 | 0.12 | -0.4 | |
3,069,027 | - | PS417_13970 | 0.13 | -0.6 | |
3,069,027 | - | PS417_13970 | 0.13 | +0.3 | |
3,069,027 | - | PS417_13970 | 0.13 | -0.7 | |
3,069,027 | - | PS417_13970 | 0.13 | +0.5 | |
3,069,200 | - | PS417_13970 | 0.28 | +0.8 | |
3,069,693 | - | PS417_13970 | 0.71 | +2.3 | |
3,069,731 | - | PS417_13970 | 0.74 | -1.4 | |
3,070,099 | + | -1.3 | |||
3,070,099 | + | +0.9 | |||
3,070,158 | + | +1.0 | |||
3,070,223 | - | +0.0 | |||
3,070,467 | + | PS417_13975 | 0.32 | -0.1 | |
3,070,687 | + | PS417_13975 | 0.51 | -0.6 | |
3,070,687 | + | PS417_13975 | 0.51 | -1.1 | |
3,070,731 | + | PS417_13975 | 0.55 | -0.7 | |
3,070,731 | + | PS417_13975 | 0.55 | -0.8 |
Or see this region's nucleotide sequence