Strain Fitness in Pseudomonas simiae WCS417 around PS417_12280
Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2'-Deoxyinosine 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
2,667,505 | + | PS417_12275 | 0.32 | +3.5 | |
2,667,506 | - | PS417_12275 | 0.32 | +0.7 | |
2,667,824 | - | PS417_12275 | 0.58 | -0.4 | |
2,668,216 | + | PS417_12275 | 0.90 | -1.4 | |
2,668,216 | + | PS417_12275 | 0.90 | -0.1 | |
2,668,217 | - | PS417_12275 | 0.90 | -2.9 | |
2,668,217 | - | PS417_12275 | 0.90 | +0.3 | |
2,668,217 | - | PS417_12275 | 0.90 | -0.8 | |
2,668,289 | + | -0.2 | |||
2,668,377 | - | +0.2 | |||
2,668,382 | + | +1.0 | |||
2,668,395 | - | -0.9 | |||
2,668,472 | + | PS417_12280 | 0.14 | -1.4 | |
2,668,529 | + | PS417_12280 | 0.28 | -1.7 | |
2,668,791 | + | -1.0 | |||
2,668,791 | + | +0.8 | |||
2,668,966 | + | +0.1 | |||
2,668,966 | + | +1.9 | |||
2,668,966 | + | +0.1 | |||
2,669,453 | + | -0.0 | |||
2,669,495 | + | -0.3 | |||
2,669,495 | + | -0.9 | |||
2,669,496 | - | -1.1 | |||
2,669,609 | + | PS417_12290 | 0.13 | -1.9 | |
2,669,726 | + | +0.7 |
Or see this region's nucleotide sequence