Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10670 and PS417_10675 are separated by 255 nucleotides PS417_10675 and PS417_10680 are separated by 152 nucleotides PS417_10680 and PS417_10685 are separated by 27 nucleotides
PS417_10670: PS417_10670 - 2,5-diketo-D-gluconic acid reductase, at 2,279,362 to 2,280,180
_10670
PS417_10675: PS417_10675 - TetR family transcriptional regulator, at 2,280,436 to 2,281,074
_10675
PS417_10680: PS417_10680 - enoyl-CoA hydratase, at 2,281,227 to 2,282,018
_10680
PS417_10685: PS417_10685 - acyl-CoA dehydrogenase, at 2,282,046 to 2,283,206
_10685
Position (kb)
2280
2281
2282 Strain fitness (log2 ratio)
-1
0
1
2 at 2279.633 kb on + strand, within PS417_10670 at 2279.633 kb on + strand, within PS417_10670 at 2279.633 kb on + strand, within PS417_10670 at 2279.634 kb on - strand, within PS417_10670 at 2279.634 kb on - strand, within PS417_10670 at 2279.897 kb on + strand, within PS417_10670 at 2280.050 kb on + strand, within PS417_10670 at 2280.316 kb on - strand at 2280.397 kb on + strand at 2280.398 kb on - strand at 2280.836 kb on - strand, within PS417_10675 at 2281.208 kb on - strand at 2281.232 kb on + strand at 2281.232 kb on + strand at 2281.233 kb on - strand at 2281.474 kb on - strand, within PS417_10680 at 2281.735 kb on + strand, within PS417_10680 at 2281.736 kb on - strand, within PS417_10680 at 2281.809 kb on - strand, within PS417_10680 at 2282.017 kb on - strand at 2282.039 kb on + strand at 2282.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 2,279,633 + PS417_10670 0.33 +2.5 2,279,633 + PS417_10670 0.33 -1.0 2,279,633 + PS417_10670 0.33 -0.5 2,279,634 - PS417_10670 0.33 -0.3 2,279,634 - PS417_10670 0.33 -0.1 2,279,897 + PS417_10670 0.65 +0.7 2,280,050 + PS417_10670 0.84 -0.2 2,280,316 - -1.6 2,280,397 + -0.9 2,280,398 - -0.1 2,280,836 - PS417_10675 0.63 +1.8 2,281,208 - -0.3 2,281,232 + -1.5 2,281,232 + -0.3 2,281,233 - +0.6 2,281,474 - PS417_10680 0.31 -1.0 2,281,735 + PS417_10680 0.64 -0.6 2,281,736 - PS417_10680 0.64 +2.3 2,281,809 - PS417_10680 0.73 -1.3 2,282,017 - -0.5 2,282,039 + -0.3 2,282,040 - +0.6
Or see this region's nucleotide sequence