Strain Fitness in Pseudomonas simiae WCS417 around PS417_10325

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10315 and PS417_10320 are separated by 1 nucleotidesPS417_10320 and PS417_10325 are separated by 84 nucleotidesPS417_10325 and PS417_10330 overlap by 1 nucleotides PS417_10315: PS417_10315 - cytochrome C biogenesis protein, at 2,205,287 to 2,206,495 _10315 PS417_10320: PS417_10320 - hypothetical protein, at 2,206,497 to 2,207,117 _10320 PS417_10325: PS417_10325 - chemotaxis protein CheY, at 2,207,202 to 2,207,573 _10325 PS417_10330: PS417_10330 - histidine kinase, at 2,207,573 to 2,209,135 _10330 Position (kb) 2207 2208Strain fitness (log2 ratio) -1 0 1 2at 2206.209 kb on - strand, within PS417_10315at 2206.337 kb on + strand, within PS417_10315at 2206.338 kb on - strand, within PS417_10315at 2206.640 kb on + strandat 2206.640 kb on + strand, within PS417_10320at 2206.743 kb on - strand, within PS417_10320at 2207.094 kb on + strandat 2207.095 kb on - strandat 2207.169 kb on - strandat 2207.182 kb on + strandat 2207.182 kb on + strandat 2207.183 kb on - strandat 2207.183 kb on - strandat 2207.745 kb on + strand, within PS417_10330at 2207.745 kb on + strand, within PS417_10330at 2207.815 kb on - strand, within PS417_10330at 2207.878 kb on + strand, within PS417_10330at 2207.988 kb on - strand, within PS417_10330at 2208.510 kb on + strand, within PS417_10330

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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2,206,209 - PS417_10315 0.76 -1.0
2,206,337 + PS417_10315 0.87 -0.5
2,206,338 - PS417_10315 0.87 -0.0
2,206,640 + +2.3
2,206,640 + PS417_10320 0.23 -0.1
2,206,743 - PS417_10320 0.40 -0.7
2,207,094 + +0.3
2,207,095 - -0.8
2,207,169 - +0.4
2,207,182 + +0.1
2,207,182 + +1.3
2,207,183 - +2.3
2,207,183 - +0.1
2,207,745 + PS417_10330 0.11 +0.4
2,207,745 + PS417_10330 0.11 -0.0
2,207,815 - PS417_10330 0.15 +1.3
2,207,878 + PS417_10330 0.20 +0.6
2,207,988 - PS417_10330 0.27 +1.4
2,208,510 + PS417_10330 0.60 -1.0

Or see this region's nucleotide sequence