Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08795 and PS417_08800 are separated by 182 nucleotides PS417_08800 and PS417_08805 are separated by 165 nucleotides PS417_08805 and PS417_08810 are separated by 10 nucleotides
PS417_08795: PS417_08795 - hydroxypyruvate reductase, at 1,913,319 to 1,914,599
_08795
PS417_08800: PS417_08800 - tartronate semialdehyde reductase, at 1,914,782 to 1,915,672
_08800
PS417_08805: PS417_08805 - hydroxypyruvate isomerase, at 1,915,838 to 1,916,620
_08805
PS417_08810: PS417_08810 - glyoxylate carboligase (EC 4.1.1.47) (from data) , at 1,916,631 to 1,918,406
_08810
Position (kb)
1914
1915
1916 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1914.064 kb on + strand, within PS417_08795 at 1914.064 kb on + strand, within PS417_08795 at 1914.066 kb on + strand, within PS417_08795 at 1914.067 kb on - strand, within PS417_08795 at 1914.067 kb on - strand, within PS417_08795 at 1914.599 kb on + strand at 1914.600 kb on - strand at 1914.600 kb on - strand at 1914.625 kb on - strand at 1914.625 kb on - strand at 1915.326 kb on + strand, within PS417_08800 at 1915.655 kb on - strand at 1915.697 kb on - strand at 1915.700 kb on + strand at 1915.700 kb on + strand at 1915.701 kb on - strand at 1915.701 kb on - strand at 1915.756 kb on - strand at 1915.900 kb on - strand at 1916.082 kb on + strand, within PS417_08805 at 1916.082 kb on + strand, within PS417_08805 at 1916.083 kb on - strand, within PS417_08805 at 1916.092 kb on - strand at 1916.160 kb on + strand, within PS417_08805 at 1916.160 kb on + strand, within PS417_08805 at 1916.160 kb on + strand, within PS417_08805 at 1916.160 kb on + strand at 1916.161 kb on - strand, within PS417_08805 at 1916.238 kb on + strand, within PS417_08805 at 1916.520 kb on + strand, within PS417_08805 at 1916.521 kb on - strand, within PS417_08805 at 1916.521 kb on - strand, within PS417_08805 at 1916.584 kb on + strand at 1916.620 kb on + strand at 1916.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 1,914,064 + PS417_08795 0.58 -0.9 1,914,064 + PS417_08795 0.58 +0.6 1,914,066 + PS417_08795 0.58 -1.6 1,914,067 - PS417_08795 0.58 -0.1 1,914,067 - PS417_08795 0.58 +1.1 1,914,599 + -0.4 1,914,600 - -0.3 1,914,600 - -1.0 1,914,625 - -0.9 1,914,625 - -0.8 1,915,326 + PS417_08800 0.61 -1.2 1,915,655 - -0.1 1,915,697 - +2.9 1,915,700 + -0.5 1,915,700 + -0.3 1,915,701 - +0.7 1,915,701 - +0.4 1,915,756 - -0.5 1,915,900 - -2.3 1,916,082 + PS417_08805 0.31 -1.5 1,916,082 + PS417_08805 0.31 -0.9 1,916,083 - PS417_08805 0.31 -1.0 1,916,092 - +0.3 1,916,160 + PS417_08805 0.41 -1.3 1,916,160 + PS417_08805 0.41 -2.2 1,916,160 + PS417_08805 0.41 -1.4 1,916,160 + +2.3 1,916,161 - PS417_08805 0.41 -3.2 1,916,238 + PS417_08805 0.51 -1.9 1,916,520 + PS417_08805 0.87 -3.3 1,916,521 - PS417_08805 0.87 +1.3 1,916,521 - PS417_08805 0.87 -1.9 1,916,584 + +0.7 1,916,620 + +0.4 1,916,645 - -0.1
Or see this region's nucleotide sequence