Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00765 and PS417_00770 are separated by 904 nucleotides PS417_00770 and PS417_00775 are separated by 63 nucleotides PS417_00775 and PS417_00780 are separated by 15 nucleotides
PS417_00765: PS417_00765 - filamentous hemagglutinin, at 163,228 to 170,496
_00765
PS417_00770: PS417_00770 - autotransporter, at 171,401 to 173,989
_00770
PS417_00775: PS417_00775 - hypothetical protein, at 174,053 to 174,640
_00775
PS417_00780: PS417_00780 - hypothetical protein, at 174,656 to 175,267
_00780
Position (kb) 171
172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 170.456 kb on - strand at 170.508 kb on + strand at 170.514 kb on + strand at 170.517 kb on + strand at 170.587 kb on + strand at 170.588 kb on - strand at 170.642 kb on + strand at 170.642 kb on + strand at 170.678 kb on - strand at 170.715 kb on + strand at 170.784 kb on - strand at 170.917 kb on + strand at 170.917 kb on + strand at 171.080 kb on + strand at 171.080 kb on + strand at 171.081 kb on - strand at 171.119 kb on + strand at 171.212 kb on + strand at 171.311 kb on + strand at 171.311 kb on + strand at 171.312 kb on - strand at 171.344 kb on - strand at 171.365 kb on - strand at 171.384 kb on - strand at 171.396 kb on + strand at 171.521 kb on + strand at 171.521 kb on + strand at 171.522 kb on - strand at 171.647 kb on - strand at 171.699 kb on - strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.907 kb on + strand, within PS417_00770 at 171.908 kb on - strand, within PS417_00770 at 171.908 kb on - strand, within PS417_00770 at 171.911 kb on + strand, within PS417_00770 at 171.911 kb on + strand, within PS417_00770 at 172.193 kb on + strand, within PS417_00770 at 172.193 kb on + strand, within PS417_00770 at 172.194 kb on - strand, within PS417_00770 at 172.194 kb on - strand, within PS417_00770 at 172.194 kb on - strand, within PS417_00770 at 172.636 kb on + strand, within PS417_00770 at 172.636 kb on + strand, within PS417_00770 at 172.636 kb on + strand, within PS417_00770 at 172.674 kb on - strand, within PS417_00770 at 172.772 kb on + strand, within PS417_00770 at 172.773 kb on - strand, within PS417_00770 at 172.853 kb on + strand, within PS417_00770 at 172.984 kb on - strand, within PS417_00770 at 173.039 kb on - strand, within PS417_00770 at 173.324 kb on + strand, within PS417_00770 at 173.331 kb on - strand, within PS417_00770 at 173.331 kb on - strand, within PS417_00770 at 173.492 kb on - strand, within PS417_00770 at 173.547 kb on - strand, within PS417_00770 at 173.624 kb on + strand, within PS417_00770 at 173.672 kb on + strand, within PS417_00770 at 173.807 kb on + strand at 173.808 kb on - strand at 173.808 kb on - strand at 173.860 kb on + strand at 173.861 kb on - strand at 173.861 kb on - strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.888 kb on + strand at 173.889 kb on - strand at 173.889 kb on - strand at 173.922 kb on - strand at 173.922 kb on - strand at 173.988 kb on - strand at 173.997 kb on + strand at 173.997 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.006 kb on - strand at 174.088 kb on + strand at 174.088 kb on + strand at 174.313 kb on - strand, within PS417_00775 at 174.313 kb on - strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.493 kb on + strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.657 kb on + strand at 174.757 kb on - strand, within PS417_00780 at 174.757 kb on - strand, within PS417_00780 at 174.770 kb on - strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.961 kb on + strand, within PS417_00780
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 170,456 - +3.4 170,508 + -2.0 170,514 + -1.0 170,517 + -0.3 170,587 + +0.3 170,588 - +0.3 170,642 + +0.3 170,642 + -1.4 170,678 - +2.4 170,715 + -0.3 170,784 - -0.2 170,917 + -0.5 170,917 + +0.2 171,080 + -0.3 171,080 + +0.2 171,081 - -0.1 171,119 + +0.8 171,212 + +0.6 171,311 + -0.5 171,311 + -1.8 171,312 - -0.4 171,344 - -0.2 171,365 - +0.5 171,384 - +1.4 171,396 + -0.3 171,521 + -0.4 171,521 + -0.2 171,522 - -1.7 171,647 - -1.5 171,699 - PS417_00770 0.12 +0.4 171,907 + PS417_00770 0.20 +1.3 171,907 + PS417_00770 0.20 -1.7 171,907 + PS417_00770 0.20 -0.4 171,907 + PS417_00770 0.20 +1.4 171,907 + PS417_00770 0.20 -0.6 171,908 - PS417_00770 0.20 -2.1 171,908 - PS417_00770 0.20 +1.4 171,911 + PS417_00770 0.20 +0.4 171,911 + PS417_00770 0.20 -0.2 172,193 + PS417_00770 0.31 -1.3 172,193 + PS417_00770 0.31 +0.0 172,194 - PS417_00770 0.31 +1.0 172,194 - PS417_00770 0.31 +1.6 172,194 - PS417_00770 0.31 -0.4 172,636 + PS417_00770 0.48 +1.6 172,636 + PS417_00770 0.48 +2.4 172,636 + PS417_00770 0.48 +0.0 172,674 - PS417_00770 0.49 -0.6 172,772 + PS417_00770 0.53 -0.0 172,773 - PS417_00770 0.53 +2.2 172,853 + PS417_00770 0.56 +0.6 172,984 - PS417_00770 0.61 -1.0 173,039 - PS417_00770 0.63 -0.8 173,324 + PS417_00770 0.74 -0.1 173,331 - PS417_00770 0.75 +1.2 173,331 - PS417_00770 0.75 +0.2 173,492 - PS417_00770 0.81 +2.4 173,547 - PS417_00770 0.83 +0.2 173,624 + PS417_00770 0.86 +0.8 173,672 + PS417_00770 0.88 +0.6 173,807 + -1.0 173,808 - +0.0 173,808 - -0.4 173,860 + +0.2 173,861 - +1.5 173,861 - -0.0 173,864 + -0.0 173,864 + -0.3 173,864 + +0.6 173,864 + -0.8 173,864 + -0.4 173,864 + +1.0 173,864 + -0.4 173,864 + -1.7 173,864 + -0.1 173,865 - -0.1 173,865 - -2.0 173,865 - -0.6 173,865 - -0.1 173,888 + +1.4 173,889 - +0.1 173,889 - -0.5 173,922 - -0.4 173,922 - +0.4 173,988 - -0.3 173,997 + -0.2 173,997 + +0.2 174,005 + -0.8 174,005 + +0.3 174,005 + -0.8 174,006 - +0.4 174,088 + +0.4 174,088 + -0.3 174,313 - PS417_00775 0.44 +1.4 174,313 - PS417_00775 0.44 -0.5 174,345 + PS417_00775 0.50 -0.5 174,345 + -0.4 174,345 + PS417_00775 0.50 -2.3 174,345 + PS417_00775 0.50 -0.6 174,345 + PS417_00775 0.50 -0.2 174,345 + PS417_00775 0.50 +0.7 174,346 - PS417_00775 0.50 +0.3 174,346 - PS417_00775 0.50 -0.6 174,346 - PS417_00775 0.50 +0.4 174,493 + PS417_00775 0.75 +0.1 174,494 - PS417_00775 0.75 +0.0 174,494 - PS417_00775 0.75 -1.2 174,494 - PS417_00775 0.75 +2.4 174,501 + PS417_00775 0.76 -0.2 174,501 + PS417_00775 0.76 -1.1 174,501 + PS417_00775 0.76 -0.2 174,501 + PS417_00775 0.76 -0.6 174,502 - PS417_00775 0.76 -2.3 174,502 - PS417_00775 0.76 -0.9 174,502 - PS417_00775 0.76 +0.8 174,657 + +1.6 174,757 - PS417_00780 0.17 -0.1 174,757 - PS417_00780 0.17 +0.6 174,770 - PS417_00780 0.19 +0.2 174,864 + PS417_00780 0.34 -0.2 174,864 + PS417_00780 0.34 -0.5 174,864 + PS417_00780 0.34 -0.5 174,865 - PS417_00780 0.34 +0.4 174,865 - PS417_00780 0.34 +0.8 174,865 - PS417_00780 0.34 -0.6 174,961 + PS417_00780 0.50 -0.3
Or see this region's nucleotide sequence