Strain Fitness in Pseudomonas simiae WCS417 around PS417_07525
Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2'-Deoxyinosine 5 mM (C) |
---|---|---|---|---|---|
remove | |||||
1,655,028 | - | PS417_07520 | 0.72 | +0.0 | |
1,655,262 | + | +0.4 | |||
1,655,390 | + | +0.8 | |||
1,655,390 | + | +0.9 | |||
1,655,390 | + | -0.5 | |||
1,655,390 | + | -0.1 | |||
1,655,391 | - | +0.0 | |||
1,655,404 | + | +1.4 | |||
1,655,467 | + | -0.4 | |||
1,655,467 | + | +0.3 | |||
1,656,070 | + | PS417_07530 | 0.24 | +4.4 | |
1,656,071 | - | PS417_07530 | 0.24 | +0.2 | |
1,656,127 | + | PS417_07530 | 0.28 | -0.0 | |
1,656,127 | + | PS417_07530 | 0.28 | +2.9 | |
1,656,128 | - | PS417_07530 | 0.28 | +0.3 | |
1,656,235 | + | PS417_07530 | 0.36 | +0.3 | |
1,656,387 | + | PS417_07530 | 0.47 | -0.5 | |
1,656,387 | + | PS417_07530 | 0.47 | +0.8 | |
1,656,387 | + | PS417_07530 | 0.47 | +0.8 | |
1,656,430 | + | PS417_07530 | 0.50 | +0.4 | |
1,656,430 | + | PS417_07530 | 0.50 | +0.8 | |
1,656,430 | + | -0.5 | |||
1,656,430 | + | PS417_07530 | 0.50 | +0.3 | |
1,656,448 | + | PS417_07530 | 0.51 | -0.2 | |
1,656,562 | + | PS417_07530 | 0.59 | +1.2 | |
1,656,574 | + | +1.6 | |||
1,656,667 | + | PS417_07530 | 0.67 | +1.4 | |
1,656,667 | + | PS417_07530 | 0.67 | +1.3 | |
1,656,668 | - | PS417_07530 | 0.67 | -1.0 | |
1,656,670 | + | PS417_07530 | 0.67 | -2.3 | |
1,656,671 | - | PS417_07530 | 0.67 | -1.3 | |
1,656,713 | - | -0.8 |
Or see this region's nucleotide sequence